PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016648871.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 151aa MW: 17003.2 Da PI: 6.884

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016648871.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.8	2.4e-40	6	106	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrrkCa+dCvlapyfp+++p++fa+vhk+FGa n++k+l++lp + re+a+++++yeA +r++dP yG+v++i++lqq+l q+++e+a XP_016648871.1 6 RCAGCKFLRRKCAQDCVLAPYFPSSNPERFACVHKIFGAGNITKMLQQLPVHVREAAADCMFYEASVRVEDPTYGCVKIISQLQQDLFQAQSEMA 100 6********************************************************************************************** PP DUF260 96 llkeel 101 ++k+++ XP_016648871.1 101 KTKAQI 106 *99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.188	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-38	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MANPTRCAGC KFLRRKCAQD CVLAPYFPSS NPERFACVHK IFGAGNITKM LQQLPVHVRE 60 AAADCMFYEA SVRVEDPTYG CVKIISQLQQ DLFQAQSEMA KTKAQIAFYN AQQQLNQQQQ 120 NMVDGVDDNY QQDLHSESSR LGLDGHFYSL G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-34	7	109	12	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-34	7	109	12	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016648871.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016648871.1	1e-111	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	1e-43	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A314Y6I0	1e-95	A0A314Y6I0_PRUYE; LOB domain-containing protein 24-like
STRING	EMJ18569	7e-96	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-44	LOB domain-containing protein 24