PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016649012.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 184aa MW: 20801.2 Da PI: 6.5998

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016649012.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.1	4e-35	59	153	2	83
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssa 82 + kkdrhski T++g+RdRRvRls+++a++fFdLqd LGfdk+skt+eWLl+++ +aik+l s +s+sec++++ s+ XP_016649012.1 59 PMKKDRHSKIFTAQGLRDRRVRLSINVARQFFDLQDLLGFDKASKTLEWLLTKSRRAIKQLGTRnkhltcststgrskSLTSSSECDDDDVD-SD 152 679**********************************************************8887888777666555544444556222222.22 PP TCP 83 s 83 XP_016649012.1 153 T 153 2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.0E-37	60	152	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.606	61	119	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MAPPLPQSLT HLGVSSNTVP PSINADDHHH YHNYYGAINN DNIFPHFLHS SREDIVAPPM 60 KKDRHSKIFT AQGLRDRRVR LSINVARQFF DLQDLLGFDK ASKTLEWLLT KSRRAIKQLG 120 TRNKHLTCST STGRSKSLTS SSECDDDDVD SDTNEVENVA SKEKEIYIEP PDPLCFTVGQ 180 ELQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-15	66	119	1	54	Putative transcription factor PCF6
5zkt_B	2e-15	66	119	1	54	Putative transcription factor PCF6
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00215	DAP	Transfer from AT1G67260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016649012.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016649012.1	1e-136	PREDICTED: transcription factor CYCLOIDEA-like
TrEMBL	M5XFN8	1e-104	M5XFN8_PRUPE; Uncharacterized protein (Fragment)
STRING	XP_008230423.1	1e-119	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1738	32	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	1e-29	TCP family protein