PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016649080.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 709aa    MW: 81105.7 Da    PI: 5.9511
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016649080.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR195.37.1e-3085179190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fYn+YAk++GFs+r+++ ++sk++++i++r+f+Cskeg+r+e++ k     + k+rr ra tr gCka ++v++++ g+w+v+kle++HnHel+
  XP_016649080.1  85 NFYNAYAKQTGFSIRVNSYYRSKKDNSIISREFCCSKEGFRRERHAKkdsgeDAKRRRARALTREGCKALMTVRRRDCGRWYVAKLEKNHNHELV 179
                     6******************************************999989999899999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-2785179IPR004330FAR1 DNA binding domain
PfamPF105513.8E-34299391IPR018289MULE transposase domain
PROSITE profilePS5096611.338581617IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-9591616IPR007527Zinc finger, SWIM-type
SMARTSM005757.8E-10592619IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MQEGIEQYIM EVVPSSECEA KGVDSFVALG DEGYEHSVAE EVEAPVVLDD GKEGYVDFDL  60
SQYIGGGVVE PTLGMEFTSE DDARNFYNAY AKQTGFSIRV NSYYRSKKDN SIISREFCCS  120
KEGFRRERHA KKDSGEDAKR RRARALTREG CKALMTVRRR DCGRWYVAKL EKNHNHELVT  180
PAMRHFLRSH KQDFGPEKSC SNSFSSPGLS LDAPVDVLTD CSSFGKMEFA VQSNVNYIGR  240
GRLSTFGIDA QSLLGFFKIM QANDPAFYYA IQVDEEERLS SVFWVDTRSR IAYNCFSDVV  300
AFDTTYQVNQ YKMPFATFTG VNHHKHSVLF GCALLADETE STFSWLFTTW LEAMSGRQPG  360
LIITDYDPAI SRAVQQVFPQ SSHRYCKWHI ISKMPKELGH VYSVTPRTFQ VEFDRCINKS  420
ETPDAFESTW QMLLDKYNLR GNNWLQSLCI DRKLWVPVYM RDTFFAGMYA AQRSGSVNSL  480
FDGYVNSGTT LQDFAEQYEK ALDERYEKEA KAEFETFYTK PVLKTPLPVE KQGADIYTRN  540
MFTIFQDEVF ESLLFAVKLS TEDGGTSTYE VSRFDEEHKT YFVAFNIAEQ LASCSCKMFE  600
FEGILCRHVL AVFKATNVFT LPQCYILKRW TRNAKEEVML DLLPCVELQA NSQKGRNLQY  660
NILYQEAIKC AEEGMASDQI FKVALNALRE ARVKIVGAKR NAMKSMPQN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016649080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016649080.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A251Q8U00.0A0A251Q8U0_PRUPE; Uncharacterized protein
STRINGEMJ179940.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5