PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016649176.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NF-YC

Protein Properties

Length: 198aa MW: 22649.9 Da PI: 10.3314

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016649176.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	26.9	1e-08	111	161	7	57
NF-YC 7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfile 57 e+++e+++++k ++P+ r+k+i+++++ +is +a l+ ka e f+ + XP_016649176.1 111 EEEVEEKEEVKSYTFPMERVKRIIRSEDSEMRISHDAVFLVNKATEKFLQK 161 46799*********************999**************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.4E-15	99	184	IPR009072	Histone-fold
Pfam	PF00808	8.7E-15	124	184	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	5.8E-15	125	183	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MATPRKATTP KKSKETKKPS SKAITPKKTQ ETKNPSIKKT PETKKPGTKK TISDKNQTSN 60 GNVSDSDVEE IPSSSSESLK DTKQDGGKIT KTPTPKSKHS NKKRKQKQEE EEEVEEKEEV 120 KSYTFPMERV KRIIRSEDSE MRISHDAVFL VNKATEKFLQ KFCEDAHACC VKDRKKSLAY 180 KHLCIRFVHK KMDTKLYC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	4	18	RKATTPKKSKETKKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016649176.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016649176.1	1e-140	PREDICTED: DNA polymerase epsilon subunit C isoform X2
TrEMBL	A0A251NMT4	1e-95	A0A251NMT4_PRUPE; Uncharacterized protein
STRING	XP_008225482.1	1e-127	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	2e-19	nuclear factor Y, subunit C10