PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016649207.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

CPP

Protein Properties

Length: 306aa MW: 33693.1 Da PI: 8.5591

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016649207.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.2	1e-15	5	43	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnC++skClk+YCeCfaag++C ++C C +C Nk e XP_016649207.1 5 CKRCNCRRSKCLKLYCECFAAGVYCVDSCACVNCYNKPE 43 89**********************************975 PP
2	TCR	53.9	3.5e-17	91	129	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkkskClk+YCeCf+a++ Cs+ C+Ce+CkN+ XP_016649207.1 91 RHKRGCNCKKSKCLKRYCECFQAKVGCSSACRCEGCKNT 129 589***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.0E-15	3	44	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.262	4	131	IPR005172	CRC domain
Pfam	PF03638	7.0E-12	6	41	IPR005172	CRC domain
SMART	SM01114	1.2E-16	91	132	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.6E-13	93	129	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MSEGCKRCNC RRSKCLKLYC ECFAAGVYCV DSCACVNCYN KPEFEDTVLD IRQQIEARNP 60 LAFTPKVVDN AIGSSPNFTE EQDLTTPSSA RHKRGCNCKK SKCLKRYCEC FQAKVGCSSA 120 CRCEGCKNTF GVTPEPVYNR AKRWASHPAE KLDNVKGAIA CIKAPGIIHY SPTWEGISDI 180 SKLTPLSHPC SRAAFSSASS SSSAKIPQAQ LPSSQLQPSG AHYDIPYDDT PEILEETSNP 240 TKVVKASSPN QKRVSPPQSQ SRLRERSPTG LRSGRKFNLQ AMPSFPPLTP HRNSKEGTNE 300 IENDDK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-19	8	135	14	126	Protein lin-54 homolog
5fd3_B	2e-19	8	135	14	126	Protein lin-54 homolog
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016649207.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016649207.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBL	A0A251PX33	0.0	A0A251PX33_PRUPE; Uncharacterized protein
TrEMBL	A0A251PX43	0.0	A0A251PX43_PRUPE; Uncharacterized protein
STRING	XP_008228663.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14277	14	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	2e-57	TESMIN/TSO1-like CXC 2