PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016649292.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 744aa MW: 86703.1 Da PI: 5.1024

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016649292.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.6	7.7e-22	134	217	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++++etrtgC a++++++ ++++w+v++++leHnH + XP_016649292.1 134 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAN-----SRKKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLF 217 69**************************************99888.....88999****************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-19	134	217	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.6E-28	339	432	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.507	626	662	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.6E-5	637	664	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence Send to blast
MTGENTFSPS DQAFSANSNL HITIQEGSQN SEQLLENENN DLENDCEQLF EIEGNEPESE 60 RDDTSDQLFD IQSNDHENDG GDINEHLFEI EGNDHESSRD DRTIIDYQNG GSQEKAYPPP 120 VVGLEFDSYD DAYNYYNCYA KELGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTIKEAN 180 SRKKETRTGC LAMIRLRLVE SNRWRVDEVK LEHNHLFDPE RAQNSKSHKR MDSGAKRKME 240 PTVDVEVRTI KLYRTPVVDA VGYGSSNSNE GETNNHVDRS KRLKLKNGDA RAIYKYFCRV 300 QLTDPNFFYV IDLNDEGYLR NVFWIDSRSR AAYNYFGDVV SFETTCLSNN YEIPLVAFVG 360 VNHHGQTILL GCGLLGDETL ETYIWLFRAW LTCMSGRPPQ TIITNQCKAM QSALAEVFPR 420 AHHRLSSSHV MQSILENMGA IQEYEAFQMI LSRTVCDSIK VDEFELAWEH MIQRFGIRDH 480 EFIQTLYDDR ERWVPVYSKD TVFAVMPNFQ KAESTNPFFD GYVHQQTSLE EFLDVYDVVL 540 EKKRQEEAHN DFESRELTPM LRTRCYYELQ LSKFYTKDVF LKFQHEVVMM TSCFSITQVH 600 TNGPLVTYMI KEREGEEIMR DNNRNFEVMY DKAGAEVRCM CSCFNLNGYL CRHALCILNY 660 NGVEEIPFQY ILSRWRKDFK RLYVPDLGSN NVDITNPVQW FDHLYRRAMQ VVQEGMISQD 720 HYMVTWQAFK ESLNKVRLVA DKHV

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence Send to blast

MTGENTFSPS DQAFSANSNL HITIQEGSQN SEQLLENENN DLENDCEQLF EIEGNEPESE  60
RDDTSDQLFD IQSNDHENDG GDINEHLFEI EGNDHESSRD DRTIIDYQNG GSQEKAYPPP  120
VVGLEFDSYD DAYNYYNCYA KELGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTIKEAN  180
SRKKETRTGC LAMIRLRLVE SNRWRVDEVK LEHNHLFDPE RAQNSKSHKR MDSGAKRKME  240
PTVDVEVRTI KLYRTPVVDA VGYGSSNSNE GETNNHVDRS KRLKLKNGDA RAIYKYFCRV  300
QLTDPNFFYV IDLNDEGYLR NVFWIDSRSR AAYNYFGDVV SFETTCLSNN YEIPLVAFVG  360
VNHHGQTILL GCGLLGDETL ETYIWLFRAW LTCMSGRPPQ TIITNQCKAM QSALAEVFPR  420
AHHRLSSSHV MQSILENMGA IQEYEAFQMI LSRTVCDSIK VDEFELAWEH MIQRFGIRDH  480
EFIQTLYDDR ERWVPVYSKD TVFAVMPNFQ KAESTNPFFD GYVHQQTSLE EFLDVYDVVL  540
EKKRQEEAHN DFESRELTPM LRTRCYYELQ LSKFYTKDVF LKFQHEVVMM TSCFSITQVH  600
TNGPLVTYMI KEREGEEIMR DNNRNFEVMY DKAGAEVRCM CSCFNLNGYL CRHALCILNY  660
NGVEEIPFQY ILSRWRKDFK RLYVPDLGSN NVDITNPVQW FDHLYRRAMQ VVQEGMISQD  720
HYMVTWQAFK ESLNKVRLVA DKHV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016649292.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016649292.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	M5XGN7	0.0	M5XGN7_PRUPE; Uncharacterized protein
STRING	XP_008228720.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]