PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016649305.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

HB-other

Protein Properties

Length: 1148aa MW: 129535 Da PI: 7.2033

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016649305.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.3	2e-11	8	58	7	57
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t++qle+Le+++ ++ryps++++e A+ +Lt +qV+ WF +R +ek+ XP_016649305.1 8 KTQSQLEALESFYSEDRYPSRTAMECHAAAFRLTYNQVRGWFVEKRRREKR 58 699**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.1E-5	2	63	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.78E-10	5	61	IPR009057	Homeodomain-like
CDD	cd00086	1.10E-7	7	60	No hit	No description
Pfam	PF00046	8.6E-9	8	58	IPR001356	Homeobox domain
PROSITE profile	PS50071	12.471	9	59	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.7E-10	9	62	IPR009057	Homeodomain-like
SMART	SM00571	2.4E-7	358	417	IPR018501	DDT domain
PROSITE profile	PS50827	11.834	358	417	IPR018501	DDT domain
Pfam	PF02791	1.5E-9	361	413	IPR018501	DDT domain
Pfam	PF15612	3.2E-5	639	671	IPR028942	WHIM1 domain
Pfam	PF15613	2.0E-11	771	844	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1148 aa Download sequence Send to blast
MMEKIKRKTQ SQLEALESFY SEDRYPSRTA MECHAAAFRL TYNQVRGWFV EKRRREKREN 60 KTTEELGGRN GSGAGAPRVV KHFPSKAPSL LRYKQTKMNG NHIQELLTPD YILKKVFRKD 120 GPPLGVEFDS LPSRALFHST DPEDLHPPCK ENQRETKRRK VTEHAVIGHQ NCNESAPVKK 180 HGVGKGLMTV WRATNPDARD FPVDMGFANG GVTSVSLIPT SVSRKPVTRN RRLQPKKSVP 240 KQGRVRNKVQ EKRKHFVKRR EVESNNENQT LPSKEKCELA LEGASSQEHS DKIAMLVDDE 300 ELELRELQGR PNALGCSDHF TTNGDHACSL CKDLLAKFPP NSVKMKQPFC MQPWDSSPEI 360 VKKLFKVFHF LCTYAVMVDI SSFTIDEFAQ AFQDKDSLLL GKIHVALLKL LLSNVEAELG 420 CGSIPHLSKS CNFLAFIHSV ENQESTLEFW KRSLNPLTWT EILRQVLVAA GFGSKQGAMR 480 RDALSKEMSL MVKYGLRPGT LKGELFRVLL EQGIHGLKVS ELAKSLQISE LNLSSGIEDL 540 ESLIGSTLSS DITLFEKISS STYRVRINSS EKEVEESQSD TEDSGAVDDD LGDSGTCSSD 600 DDSGCNSGNS QIKKLTYMNH GKSKDNMVTV YTEIDESHPG EVWLLGLMEG EYSDLSIEEK 660 LSAIVALIDL LHAGSGFRME DPINAIAECV PSSLHSGSGA KIKRLSTKQH GMPRPTWVHA 720 GHTSGAKEDY TLKFHPIDSS GSISKFSDER FSTKEKNGKE REVRFDIHPM QSVFLGSDRR 780 YNRYWLFLGP CNAYDPGHRR VYFESSEDGH WEVIDTEEAL CALLSVLDDR GKREALLIES 840 LEKRIAFLCQ AMSSRMVNSD RIDNLAQSDQ SELDSVREDT YSPVSDVDNN LSGIANDSLP 900 SSGVVVLEVR KKGEQQKQKW SRIQAFDSWL WNSFYLELNA VKHGKRSYFD TLTRCESCHD 960 LYWRDEKHCR ICHTTFELHF DLEERYAIHV ATCKEKEASD TFPKHKVLSS QIQSLKAAMH 1020 AIESAMPEDA LLGAWKKSAH KLWVKRLRRT SSLAELLQVL GDFVGAINED RLYECNIEQG 1080 SCNFSEELIA SFACMPQTTS AVALWLVRLD ALIAPYLERA HSQKRLEISV RGFETVVLCM 1140 KLCFKFSI

Sequence ? help Back to Top

Protein Sequence Length: 1148 aa Download sequence Send to blast

MMEKIKRKTQ SQLEALESFY SEDRYPSRTA MECHAAAFRL TYNQVRGWFV EKRRREKREN  60
KTTEELGGRN GSGAGAPRVV KHFPSKAPSL LRYKQTKMNG NHIQELLTPD YILKKVFRKD  120
GPPLGVEFDS LPSRALFHST DPEDLHPPCK ENQRETKRRK VTEHAVIGHQ NCNESAPVKK  180
HGVGKGLMTV WRATNPDARD FPVDMGFANG GVTSVSLIPT SVSRKPVTRN RRLQPKKSVP  240
KQGRVRNKVQ EKRKHFVKRR EVESNNENQT LPSKEKCELA LEGASSQEHS DKIAMLVDDE  300
ELELRELQGR PNALGCSDHF TTNGDHACSL CKDLLAKFPP NSVKMKQPFC MQPWDSSPEI  360
VKKLFKVFHF LCTYAVMVDI SSFTIDEFAQ AFQDKDSLLL GKIHVALLKL LLSNVEAELG  420
CGSIPHLSKS CNFLAFIHSV ENQESTLEFW KRSLNPLTWT EILRQVLVAA GFGSKQGAMR  480
RDALSKEMSL MVKYGLRPGT LKGELFRVLL EQGIHGLKVS ELAKSLQISE LNLSSGIEDL  540
ESLIGSTLSS DITLFEKISS STYRVRINSS EKEVEESQSD TEDSGAVDDD LGDSGTCSSD  600
DDSGCNSGNS QIKKLTYMNH GKSKDNMVTV YTEIDESHPG EVWLLGLMEG EYSDLSIEEK  660
LSAIVALIDL LHAGSGFRME DPINAIAECV PSSLHSGSGA KIKRLSTKQH GMPRPTWVHA  720
GHTSGAKEDY TLKFHPIDSS GSISKFSDER FSTKEKNGKE REVRFDIHPM QSVFLGSDRR  780
YNRYWLFLGP CNAYDPGHRR VYFESSEDGH WEVIDTEEAL CALLSVLDDR GKREALLIES  840
LEKRIAFLCQ AMSSRMVNSD RIDNLAQSDQ SELDSVREDT YSPVSDVDNN LSGIANDSLP  900
SSGVVVLEVR KKGEQQKQKW SRIQAFDSWL WNSFYLELNA VKHGKRSYFD TLTRCESCHD  960
LYWRDEKHCR ICHTTFELHF DLEERYAIHV ATCKEKEASD TFPKHKVLSS QIQSLKAAMH  1020
AIESAMPEDA LLGAWKKSAH KLWVKRLRRT SSLAELLQVL GDFVGAINED RLYECNIEQG  1080
SCNFSEELIA SFACMPQTTS AVALWLVRLD ALIAPYLERA HSQKRLEISV RGFETVVLCM  1140
KLCFKFSI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250\|UniProtKB:F4HY56}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016649305.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM465585	7e-44	AM465585.2 Vitis vinifera contig VV78X239647.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016649305.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X1
Swissprot	F4JRF5	0.0	RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBL	A0A251PUE5	0.0	A0A251PUE5_PRUPE; Uncharacterized protein
STRING	XP_008228086.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6118	15	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator