PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016649308.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

HB-other

Protein Properties

Length: 1122aa MW: 126530 Da PI: 6.8875

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016649308.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.3	1.9e-11	8	58	7	57
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t++qle+Le+++ ++ryps++++e A+ +Lt +qV+ WF +R +ek+ XP_016649308.1 8 KTQSQLEALESFYSEDRYPSRTAMECHAAAFRLTYNQVRGWFVEKRRREKR 58 699**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.1E-5	2	63	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.69E-10	5	61	IPR009057	Homeodomain-like
CDD	cd00086	1.04E-7	7	60	No hit	No description
Pfam	PF00046	8.4E-9	8	58	IPR001356	Homeobox domain
PROSITE profile	PS50071	12.471	9	59	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.6E-10	9	62	IPR009057	Homeodomain-like
PROSITE profile	PS50827	11.834	332	391	IPR018501	DDT domain
SMART	SM00571	2.4E-7	332	391	IPR018501	DDT domain
Pfam	PF02791	1.4E-9	335	387	IPR018501	DDT domain
Pfam	PF15612	3.1E-5	613	645	IPR028942	WHIM1 domain
Pfam	PF15613	2.0E-11	745	818	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1122 aa Download sequence Send to blast
MMEKIKRKTQ SQLEALESFY SEDRYPSRTA MECHAAAFRL TYNQVRGWFV EKRRREKREN 60 KTTEELGGRN GSGAGAPREL LTPDYILKKV FRKDGPPLGV EFDSLPSRAL FHSTDPEDLH 120 PPCKENQRET KRRKVTEHAV IGHQNCNESA PVKKHGVGKG LMTVWRATNP DARDFPVDMG 180 FANGGVTSVS LIPTSVSRKP VTRNRRLQPK KSVPKQGRVR NKVQEKRKHF VKRREVESNN 240 ENQTLPSKEK CELALEGASS QEHSDKIAML VDDEELELRE LQGRPNALGC SDHFTTNGDH 300 ACSLCKDLLA KFPPNSVKMK QPFCMQPWDS SPEIVKKLFK VFHFLCTYAV MVDISSFTID 360 EFAQAFQDKD SLLLGKIHVA LLKLLLSNVE AELGCGSIPH LSKSCNFLAF IHSVENQEST 420 LEFWKRSLNP LTWTEILRQV LVAAGFGSKQ GAMRRDALSK EMSLMVKYGL RPGTLKGELF 480 RVLLEQGIHG LKVSELAKSL QISELNLSSG IEDLESLIGS TLSSDITLFE KISSSTYRVR 540 INSSEKEVEE SQSDTEDSGA VDDDLGDSGT CSSDDDSGCN SGNSQIKKLT YMNHGKSKDN 600 MVTVYTEIDE SHPGEVWLLG LMEGEYSDLS IEEKLSAIVA LIDLLHAGSG FRMEDPINAI 660 AECVPSSLHS GSGAKIKRLS TKQHGMPRPT WVHAGHTSGA KEDYTLKFHP IDSSGSISKF 720 SDERFSTKEK NGKEREVRFD IHPMQSVFLG SDRRYNRYWL FLGPCNAYDP GHRRVYFESS 780 EDGHWEVIDT EEALCALLSV LDDRGKREAL LIESLEKRIA FLCQAMSSRM VNSDRIDNLA 840 QSDQSELDSV REDTYSPVSD VDNNLSGIAN DSLPSSGVVV LEVRKKGEQQ KQKWSRIQAF 900 DSWLWNSFYL ELNAVKHGKR SYFDTLTRCE SCHDLYWRDE KHCRICHTTF ELHFDLEERY 960 AIHVATCKEK EASDTFPKHK VLSSQIQSLK AAMHAIESAM PEDALLGAWK KSAHKLWVKR 1020 LRRTSSLAEL LQVLGDFVGA INEDRLYECN IEQGSCNFSE ELIASFACMP QTTSAVALWL 1080 VRLDALIAPY LERAHSQKRL EISVRGFETV VLCMKLCFKF SI

Sequence ? help Back to Top

Protein Sequence Length: 1122 aa Download sequence Send to blast

MMEKIKRKTQ SQLEALESFY SEDRYPSRTA MECHAAAFRL TYNQVRGWFV EKRRREKREN  60
KTTEELGGRN GSGAGAPREL LTPDYILKKV FRKDGPPLGV EFDSLPSRAL FHSTDPEDLH  120
PPCKENQRET KRRKVTEHAV IGHQNCNESA PVKKHGVGKG LMTVWRATNP DARDFPVDMG  180
FANGGVTSVS LIPTSVSRKP VTRNRRLQPK KSVPKQGRVR NKVQEKRKHF VKRREVESNN  240
ENQTLPSKEK CELALEGASS QEHSDKIAML VDDEELELRE LQGRPNALGC SDHFTTNGDH  300
ACSLCKDLLA KFPPNSVKMK QPFCMQPWDS SPEIVKKLFK VFHFLCTYAV MVDISSFTID  360
EFAQAFQDKD SLLLGKIHVA LLKLLLSNVE AELGCGSIPH LSKSCNFLAF IHSVENQEST  420
LEFWKRSLNP LTWTEILRQV LVAAGFGSKQ GAMRRDALSK EMSLMVKYGL RPGTLKGELF  480
RVLLEQGIHG LKVSELAKSL QISELNLSSG IEDLESLIGS TLSSDITLFE KISSSTYRVR  540
INSSEKEVEE SQSDTEDSGA VDDDLGDSGT CSSDDDSGCN SGNSQIKKLT YMNHGKSKDN  600
MVTVYTEIDE SHPGEVWLLG LMEGEYSDLS IEEKLSAIVA LIDLLHAGSG FRMEDPINAI  660
AECVPSSLHS GSGAKIKRLS TKQHGMPRPT WVHAGHTSGA KEDYTLKFHP IDSSGSISKF  720
SDERFSTKEK NGKEREVRFD IHPMQSVFLG SDRRYNRYWL FLGPCNAYDP GHRRVYFESS  780
EDGHWEVIDT EEALCALLSV LDDRGKREAL LIESLEKRIA FLCQAMSSRM VNSDRIDNLA  840
QSDQSELDSV REDTYSPVSD VDNNLSGIAN DSLPSSGVVV LEVRKKGEQQ KQKWSRIQAF  900
DSWLWNSFYL ELNAVKHGKR SYFDTLTRCE SCHDLYWRDE KHCRICHTTF ELHFDLEERY  960
AIHVATCKEK EASDTFPKHK VLSSQIQSLK AAMHAIESAM PEDALLGAWK KSAHKLWVKR  1020
LRRTSSLAEL LQVLGDFVGA INEDRLYECN IEQGSCNFSE ELIASFACMP QTTSAVALWL  1080
VRLDALIAPY LERAHSQKRL EISVRGFETV VLCMKLCFKF SI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250\|UniProtKB:F4HY56}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016649308.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM465585	7e-44	AM465585.2 Vitis vinifera contig VV78X239647.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016649308.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X4
Swissprot	F4JRF5	0.0	RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBL	A0A251PUE5	0.0	A0A251PUE5_PRUPE; Uncharacterized protein
STRING	XP_008228086.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator