PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016649338.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 240aa MW: 27684.8 Da PI: 7.1264

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016649338.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.3	5.5e-31	22	74	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWtp+LHe Fveave+LGG++kAtPk+il++m+vkgL ++hvkSHLQ+YR XP_016649338.1 22 PRLRWTPQLHELFVEAVESLGGKHKATPKRILQTMSVKGLKISHVKSHLQMYR 74 9**************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.002	18	78	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-28	19	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.54E-14	21	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-23	22	74	IPR006447	Myb domain, plants
Pfam	PF00249	3.5E-8	23	74	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MNEEMKSYQK IGVRNYQKSD HPRLRWTPQL HELFVEAVES LGGKHKATPK RILQTMSVKG 60 LKISHVKSHL QMYRGVNDNA YSQDHSSNVF SIFSPQTQTQ SRPSENYYLR YEQHVMFSET 120 DEETKGRILT KEEAAGKQQN QVLQAQKYHL HQTSFKKNAH TPELSRLSMN EETCQLYGFC 180 ELSLSFNPTV TTMAQFRKES ELWPSADEHN TSQSSSTGNF SNIQDFQEVG SNDINLDLTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-18	23	74	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-18	23	74	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-18	23	74	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-18	23	74	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-18	23	74	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-18	23	74	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-18	23	74	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-18	23	74	4	55	Protein PHOSPHATE STARVATION RESPONSE 1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016649338.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016649338.1	0.0	PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
TrEMBL	A0A251Q553	1e-172	A0A251Q553_PRUPE; Uncharacterized protein
STRING	XP_008229586.1	1e-165	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9186	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-27	G2-like family protein