PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016649470.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28249.8 Da    PI: 9.9438
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016649470.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.6e-312473150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  XP_016649470.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 73
                    79***********************************************8 PP
2K-box93.53.6e-3111319023100
           K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       +++i+++q+++Rh+lGe L++L++keL++Le +Lek++++iRskKne+l+++ie +qk+e elq++n++Lr+k++e
  XP_016649470.1 113 ASRRQIREIQNSNRHILGEALSTLNIKELKNLEGRLEKGISRIRSKKNEMLFAEIEFMQKREIELQNHNNYLRAKIAE 190
                     44789**********************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-401675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.5151676IPR002100Transcription factor, MADS-box
CDDcd002652.91E-431791No hitNo description
SuperFamilySSF554558.76E-331789IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-331838IPR002100Transcription factor, MADS-box
PfamPF003192.0E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-335374IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.901104194IPR002487Transcription factor, K-box
PfamPF014863.2E-22115188IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEFPNQAPES SSQRKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSTRGRLY EYANNSVRAT IDRYKKACTD STNGGSVSEA NTQVNSAVTT CMASRRQIRE  120
IQNSNRHILG EALSTLNIKE LKNLEGRLEK GISRIRSKKN EMLFAEIEFM QKREIELQNH  180
NNYLRAKIAE NERAQQQQTN MIQGTSYDQS MPSQSYDRNF LPVILEANNN NNNHYSRHDQ  240
TALQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A7e-201784168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B7e-201784168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C7e-201784168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D7e-201784168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1tqe_P8e-201684169Myocyte-specific enhancer factor 2B
1tqe_Q8e-201684169Myocyte-specific enhancer factor 2B
1tqe_R8e-201684169Myocyte-specific enhancer factor 2B
1tqe_S8e-201684169Myocyte-specific enhancer factor 2B
5f28_A7e-201684169MEF2C
5f28_B7e-201684169MEF2C
5f28_C7e-201684169MEF2C
5f28_D7e-201684169MEF2C
6c9l_A8e-201684169Myocyte-specific enhancer factor 2B
6c9l_B8e-201684169Myocyte-specific enhancer factor 2B
6c9l_C8e-201684169Myocyte-specific enhancer factor 2B
6c9l_D8e-201684169Myocyte-specific enhancer factor 2B
6c9l_E8e-201684169Myocyte-specific enhancer factor 2B
6c9l_F8e-201684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00093SELEXTransfer from AT3G58780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016649470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9117010.0JF911701.1 Prunus triloba cultivar Plena SHATTERPPOOF-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016649470.10.0PREDICTED: floral homeotic protein AGAMOUS
SwissprotQ93XH41e-119MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLF8UV151e-164F8UV15_9ROSA; SHATTERPPOOF-like protein
STRINGXP_008229393.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-101MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]