PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016649472.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 843aa MW: 97849.9 Da PI: 6.4529

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016649472.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73	6.5e-23	164	250	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA GFs+rk+ +ks+ ng +++r+++C+++g+r ++++ + r++r+etrtgC a++++ ++ +gk++vt++e eHnHe++ XP_016649472.1 164 CYSRYAVLEGFSIRKDFVNKSRINGIVVSRRYTCYRQGYRPIQHNA--NVRKSRQETRTGCLAHMTIARQPNGKFCVTHFEPEHNHEFV 250 7***************************************9988..9999********************************986 PP
2	FAR1	91.5	1.1e-28	298	386	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA +vGFsvrk++ ++sk ng++++r+f+C +eg+r+++k++ + +r+r+etr+gC a+l+++++ d++++vt++e++HnHel+ XP_016649472.1 298 EFYNTYAGRVGFSVRKDYVNRSKINGSVVSRRFTCFREGFRQRDKRD-MNVKRPRKETRIGCLAQLVISRQPDDRYRVTHFEEKHNHELV 386 6*****************************************999.99************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-20	164	250	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	4.2E-26	298	386	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-31	508	602	IPR018289	MULE transposase domain
Pfam	PF04434	6.6E-5	777	823	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.854	788	824	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0028	799	826	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence Send to blast
MGCSDPDISS HPQEESDYNE LPTSFRLDID VQRDCRSSKD SSAERSQAVI DHEHDFPREC 60 QSPKGSSFEK RLVVIDTEQE YQSPIPSSMD KNQVEIDCKE CETPKFYSVS KFEMDVDGEL 120 ELQSPNVPCA DVPGAGMAMK GEEYIYVVPQ IGVEFESEDH AYNCYSRYAV LEGFSIRKDF 180 VNKSRINGIV VSRRYTCYRQ GYRPIQHNAN VRKSRQETRT GCLAHMTIAR QPNGKFCVTH 240 FEPEHNHEFV APCTTYLLPS QKRLNFAQAV EANLGDKSGI DGVPKLGMGF DSEDHAYEFY 300 NTYAGRVGFS VRKDYVNRSK INGSVVSRRF TCFREGFRQR DKRDMNVKRP RKETRIGCLA 360 QLVISRQPDD RYRVTHFEEK HNHELVAACR VHMLRSQKRL IAAQVFEGDL VDCSNMQPES 420 ASELIRKTGR DSDNHGYDPI DYKNKLPFKC MRGMREGESA RLQQFFQSKQ LKNPSFFYAL 480 QPDVDDQVTN VFWVDTKMAM DYGDFGDVIC FDTTYRLQKD TQPFTPFIGI NHHKQMLIFG 540 AALLYDESVE SYKWLFQTFL EAMSGKKPKT ILTDQDALMA EAIDKVFPET LHRICVWHVY 600 QNALKQLSYM FAGSGSFIND LSSCLFDHED EEDFINAWKV LLDVYGLWEN EWLHEMFEYR 660 EKWATAYGRH IFCADIKAVL LHESFTENLR KYLKSGSDVL LLCKHLGKVI NDWHYKELEG 720 NYNMHHHLPE LMGDVILLKH ARNMYTPMIF ELFQQEYETC LNIIVNQCTQ TGPLFEYKVS 780 IYGQPREYMV TFDSSTETVA CNCMKFEFMG VLCSHALKVL DYRNIKILPS KYILKRWSKD 840 ARV

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence Send to blast

MGCSDPDISS HPQEESDYNE LPTSFRLDID VQRDCRSSKD SSAERSQAVI DHEHDFPREC  60
QSPKGSSFEK RLVVIDTEQE YQSPIPSSMD KNQVEIDCKE CETPKFYSVS KFEMDVDGEL  120
ELQSPNVPCA DVPGAGMAMK GEEYIYVVPQ IGVEFESEDH AYNCYSRYAV LEGFSIRKDF  180
VNKSRINGIV VSRRYTCYRQ GYRPIQHNAN VRKSRQETRT GCLAHMTIAR QPNGKFCVTH  240
FEPEHNHEFV APCTTYLLPS QKRLNFAQAV EANLGDKSGI DGVPKLGMGF DSEDHAYEFY  300
NTYAGRVGFS VRKDYVNRSK INGSVVSRRF TCFREGFRQR DKRDMNVKRP RKETRIGCLA  360
QLVISRQPDD RYRVTHFEEK HNHELVAACR VHMLRSQKRL IAAQVFEGDL VDCSNMQPES  420
ASELIRKTGR DSDNHGYDPI DYKNKLPFKC MRGMREGESA RLQQFFQSKQ LKNPSFFYAL  480
QPDVDDQVTN VFWVDTKMAM DYGDFGDVIC FDTTYRLQKD TQPFTPFIGI NHHKQMLIFG  540
AALLYDESVE SYKWLFQTFL EAMSGKKPKT ILTDQDALMA EAIDKVFPET LHRICVWHVY  600
QNALKQLSYM FAGSGSFIND LSSCLFDHED EEDFINAWKV LLDVYGLWEN EWLHEMFEYR  660
EKWATAYGRH IFCADIKAVL LHESFTENLR KYLKSGSDVL LLCKHLGKVI NDWHYKELEG  720
NYNMHHHLPE LMGDVILLKH ARNMYTPMIF ELFQQEYETC LNIIVNQCTQ TGPLFEYKVS  780
IYGQPREYMV TFDSSTETVA CNCMKFEFMG VLCSHALKVL DYRNIKILPS KYILKRWSKD  840
ARV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016649472.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016649472.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 12-like
TrEMBL	A0A2I4E4L0	0.0	A0A2I4E4L0_JUGRE; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008230452.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-115	FAR1-related sequence 5