PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016649487.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Dof
Protein Properties Length: 226aa    MW: 24214.5 Da    PI: 8.5752
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016649487.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.44.2e-401676262
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    ++++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG+lrn+PvGgg+rkn k+s
  XP_016649487.1 16 EQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGSLRNIPVGGGSRKNTKRS 76
                    57899****************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-28668IPR003851Zinc finger, Dof-type
PfamPF027016.1E-331874IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3292074IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102258IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MQDPTTFQPM KPQFPEQEQL KCPRCDSPNT KFCYYNNYNL SQPRHFCKNC RRYWTKGGSL  60
RNIPVGGGSR KNTKRSSSSA SKRSSSTSSS SVSSSSAATA AAQNPDPQPD RTRVYGPKID  120
QDRGVLDISG SFSSLLTSNG QFGSLLEGLN PNGSGLKLMQ MGDFGVNLDS GNGLNSDPGV  180
NPGLEAQSNG NPESYMGLQN GDSSSCWNGG NGWPDLAIYT PGSSFQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016649487.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8572523e-61DQ857252.1 Glycine max Dof1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016649487.11e-164PREDICTED: dof zinc finger protein DOF3.1-like
SwissprotO821553e-46DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLM5WV641e-162M5WV64_PRUPE; Uncharacterized protein
STRINGXP_008228327.11e-164(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61813351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.13e-40DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]