PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016649537.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 302aa MW: 32396.6 Da PI: 7.6598

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016649537.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.8	2.6e-31	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql++l XP_016649537.1 4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCHL 98 6******************************************************************************************** PP DUF260 91 kaelallkee 100 ++e++l +++ XP_016649537.1 99 AVEAVLKGQP 108 *9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	1.1E-96	1	297	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	17.125	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.2E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCHLAV EAVLKGQPIT SITSEAAADG 120 HGPPLKAYDI RHVSKDENSA ASNEPKQAKT RYRFKRSVVK PKPSKVGSGS GSGADDSAKP 180 SCVGCCADEL NRSTSHESSL SHQSEAAANV DGESKETESM VSSETAEAEL LFRAEPESAL 240 KRSEPVQEGE LALELTLGLE PQSRAHHVVP VKKRRIDAYG LGGRSSADDG GCKMELGLDL 300 VA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016649537.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016649537.1	0.0	PREDICTED: LOB domain-containing protein 41
Swissprot	Q9M886	1e-113	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	M5WTB8	0.0	M5WTB8_PRUPE; Uncharacterized protein
STRING	XP_008230405.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-97	LOB domain-containing protein 41