PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016649619.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Protein Properties

Length: 148aa MW: 16786.2 Da PI: 4.6365

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016649619.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.9	1.6e-12	33	121	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgrsefelvv 94 f+ vlt+ + + +lv+p +f ++ +s t+ + +g+ We+ + ++s++ l +Wk F+ +n+Lk+gD +vF+ l+ s+++lv+ XP_016649619.1 33 FDVVLTKTNIEHLYQLVVPGRFSATLP---SCS-IPTVLTFRGKNWEMIY--HGSSSHKRLD-NWKAFAIDNNLKVGDACVFEqLEC-SSTRLVF 119 556677777777799999999987763...344.4577889*******..8888877787.******************5444.5555554 PP EE CS B3 95 kv 96 +v XP_016649619.1 120 RV 121 43 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.5E-14	30	123	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.5E-17	30	122	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.44E-18	31	125	No hit	No description
SMART	SM01019	0.0018	33	127	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.1E-10	33	120	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.433	33	127	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MKGEPQMGDL LTSNPVIELE GDEFWPLSWK PFFDVVLTKT NIEHLYQLVV PGRFSATLPS 60 CSIPTVLTFR GKNWEMIYHG SSSHKRLDNW KAFAIDNNLK VGDACVFEQL ECSSTRLVFR 120 VQILRGDIPS EFLDKLDGDN VDAPIVLE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016649619.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008232178.1	1e-106	PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X1
Refseq	XP_016649618.1	1e-107	PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X2
Refseq	XP_016649619.1	1e-107	PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X3
TrEMBL	M5X1G4	4e-98	M5X1G4_PRUPE; Uncharacterized protein
STRING	XP_008232178.1	1e-106	(Prunus mume)