PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016649629.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 377aa MW: 42602.3 Da PI: 7.0491

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016649629.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.3	7e-40	210	304	6	100
DUF260 6 kvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 k+lrr+CakdC++apyfp+++p+kfa vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la++++e XP_016649629.1 210 KLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISFLQSQVSQLQMQLAVAQAE 304 89****************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.017	204	305	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.6E-39	210	302	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MSEIFHSLVL NKRFDDATLR VLESALVSKD VKSSIEVRSG LRQFLRSESL SVLREISEKS 60 AEEKLLVLEF LVRSFALVGD VESCLALRYE ALLLRDLKSA TNPWLQVPYT EWLNFAHQSK 120 DSGFYSVAGR ACENALVCFK RKCAEDPKTD EDYVTKKSTE DAKADGVFEN VQVIEQIKRL 180 KDCAMASASS HSGTQMAFSS RLNFRAKGQK LLRRRCAKDC IFAPYFPSDD PHKFALVHKV 240 FGASNVSKML QELPIHQRGD AVSSLVYEAN ARVRDPVYGC VGAISFLQSQ VSQLQMQLAV 300 AQAEILCIQM QQEPVALPNQ IDHQHNHHHQ DHDHDHDQKS LLLSNSDFNN IPHQYFSSFA 360 SSSNVIQDPL KRESLWT

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MSEIFHSLVL NKRFDDATLR VLESALVSKD VKSSIEVRSG LRQFLRSESL SVLREISEKS  60
AEEKLLVLEF LVRSFALVGD VESCLALRYE ALLLRDLKSA TNPWLQVPYT EWLNFAHQSK  120
DSGFYSVAGR ACENALVCFK RKCAEDPKTD EDYVTKKSTE DAKADGVFEN VQVIEQIKRL  180
KDCAMASASS HSGTQMAFSS RLNFRAKGQK LLRRRCAKDC IFAPYFPSDD PHKFALVHKV  240
FGASNVSKML QELPIHQRGD AVSSLVYEAN ARVRDPVYGC VGAISFLQSQ VSQLQMQLAV  300
AQAEILCIQM QQEPVALPNQ IDHQHNHHHQ DHDHDHDQKS LLLSNSDFNN IPHQYFSSFA  360
SSSNVIQDPL KRESLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	210	318	16	127	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	210	318	16	127	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016649629.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ378626	2e-90	FQ378626.1 Vitis vinifera clone SS0AEB13YA05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016649629.1	0.0	PREDICTED: uncharacterized protein LOC103336266
TrEMBL	A0A314UUL2	0.0	A0A314UUL2_PRUYE; Uncharacterized protein
STRING	XP_008237562.1	1e-134	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-56	LBD family protein