PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016649709.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 879aa MW: 100980 Da PI: 7.851

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016649709.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.4	1.4e-24	115	200	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Yn+YA+ vGFsvrk + +k +ng i kr+f+Cs+eg+ +++++ +++r++ r gCka+l +k+++dgk++v++++ eHnH+l+p XP_016649709.1 115 QYYNSYARCVGFSVRKLRVNKD-KNGVIHKREFCCSCEGFYRKKTTP----KKKREQRRFGCKAMLGIKLNRDGKYVVKNFVAEHNHDLVP 200 69**************9998.8999*********9998777....899999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-21	115	200	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-31	321	415	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.965	600	638	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-5	613	636	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-5	613	640	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 879 aa Download sequence Send to blast
MYGKERVVFP FPWASKERDG LPVVMIMTII PYTSLHEKKI STAYTASVLM DHEEDEFHAT 60 YSNDGKESID CIHLDSDSES LDLLYHNEQI EELTRKFGDS PTLGISFDNE QEAYQYYNSY 120 ARCVGFSVRK LRVNKDKNGV IHKREFCCSC EGFYRKKTTP KKKREQRRFG CKAMLGIKLN 180 RDGKYVVKNF VAEHNHDLVP LSSSHLLRSQ RTIEPSQAGF INQMHHAGPK PSQIFSYMTT 240 EAGGPQHLNF IQADCNNLIM RKRTEFQKRG DSQCLLEYFK QKQAQDKSFF YSIRTNMENE 300 ICGCFFCDGK ARRDYAIFGD VMCFDTTFKT NNYNMVCAPI IGLNNHGQTI LFGCGLLDGE 360 STDACEWLFK VFLQANEGKE PKTIFTDQAQ SIAAAIIEVF PNCHHRLCLW HIYQNAAKNL 420 GHVFSEFQAF AKDFKSCVYD PEIVEEFESS WEALLDDYGL RGNSWLEGIY ALREKWAQVY 480 GRDHFCAGMT TTQRSESINA FLKKFFSRNL LLREFVVQYD KAVADRREKE RQAETATKQK 540 WRNLSSNWNV EIEATTKYTS KLFYCFQDEC KKLLGLRLKL QSDDGLTRRY MVMNSGMRGM 600 SRSLTYDLSD QTVSCSCKKF EFEGILCAHA LKLYHELEFS TLPSKYYLKR WSKEATCDVD 660 FDSNGEIPLS TLESSSMVQY SELSHIVQRI IAKGARNNQT CTFLKSELLQ LEAKLEKHPY 720 FGDEHDEILD KHVSEDEDNL KLRDPKIQKS KGRGKGRIKS SLESKPSKKK GSSKRKASKE 780 INLSAHEMSG HSNLYTHAQE LLGMSTQNHF NMASICKVAD FQYGFPTVSS VQGIPNHPLG 840 YQAIHPLLSN YSLIHPQENI QLRPEGLAYQ LSFSHPSTS

Sequence ? help Back to Top

Protein Sequence Length: 879 aa Download sequence Send to blast

MYGKERVVFP FPWASKERDG LPVVMIMTII PYTSLHEKKI STAYTASVLM DHEEDEFHAT  60
YSNDGKESID CIHLDSDSES LDLLYHNEQI EELTRKFGDS PTLGISFDNE QEAYQYYNSY  120
ARCVGFSVRK LRVNKDKNGV IHKREFCCSC EGFYRKKTTP KKKREQRRFG CKAMLGIKLN  180
RDGKYVVKNF VAEHNHDLVP LSSSHLLRSQ RTIEPSQAGF INQMHHAGPK PSQIFSYMTT  240
EAGGPQHLNF IQADCNNLIM RKRTEFQKRG DSQCLLEYFK QKQAQDKSFF YSIRTNMENE  300
ICGCFFCDGK ARRDYAIFGD VMCFDTTFKT NNYNMVCAPI IGLNNHGQTI LFGCGLLDGE  360
STDACEWLFK VFLQANEGKE PKTIFTDQAQ SIAAAIIEVF PNCHHRLCLW HIYQNAAKNL  420
GHVFSEFQAF AKDFKSCVYD PEIVEEFESS WEALLDDYGL RGNSWLEGIY ALREKWAQVY  480
GRDHFCAGMT TTQRSESINA FLKKFFSRNL LLREFVVQYD KAVADRREKE RQAETATKQK  540
WRNLSSNWNV EIEATTKYTS KLFYCFQDEC KKLLGLRLKL QSDDGLTRRY MVMNSGMRGM  600
SRSLTYDLSD QTVSCSCKKF EFEGILCAHA LKLYHELEFS TLPSKYYLKR WSKEATCDVD  660
FDSNGEIPLS TLESSSMVQY SELSHIVQRI IAKGARNNQT CTFLKSELLQ LEAKLEKHPY  720
FGDEHDEILD KHVSEDEDNL KLRDPKIQKS KGRGKGRIKS SLESKPSKKK GSSKRKASKE  780
INLSAHEMSG HSNLYTHAQE LLGMSTQNHF NMASICKVAD FQYGFPTVSS VQGIPNHPLG  840
YQAIHPLLSN YSLIHPQENI QLRPEGLAYQ LSFSHPSTS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016649709.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016649709.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	M5Y1H3	0.0	M5Y1H3_PRUPE; Uncharacterized protein (Fragment)
STRING	EMJ25510	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-132	FAR1-related sequence 5