PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016649765.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 273aa    MW: 30695.8 Da    PI: 9.5842
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016649765.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.16.7e-141178173
            FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73
                    +fY+eYAke GF  +k + ++sk++ge + ++f C+++gk+++++       ++r+  +++Cka+l+vk++ +
  XP_016649765.1 11 EFYSEYAKEKGFAASKVSCRRSKTSGEWIGAKFACTRYGKKRKSDAI-----NPRPCLKIDCKASLEVKRRVS 78
                    6****************************************998776.....9****************9974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-111178IPR004330FAR1 DNA binding domain
SuperFamilySSF537566.73E-8144204No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEFHSDDKAY EFYSEYAKEK GFAASKVSCR RSKTSGEWIG AKFACTRYGK KRKSDAINPR  60
PCLKIDCKAS LEVKRRVSNT KGAPKRVKNQ NSNGKKYNKK PKKAQANLGL SNDGMESSLP  120
RQEQARTRND ASDNYKDTHE CLQQIVAYDH LQQPIKQFIG DQLPDWLILD FAPHWAVEIA  180
QEYGVPLVFF SVLSAASMSI LGLQEHLSGA DNRNHVLPSQ ESLTSPQDWV AFSSFVAYRE  240
HEAVRVLKGL FEVNGSGVSD RIFRTCAIGL KSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
183102PKRVKNQNSNGKKYNKKPKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016649765.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016649765.10.0PREDICTED: soyasaponin III rhamnosyltransferase-like
STRINGXP_008233036.11e-133(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.27e-22FAR1-related sequence 4