PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016649791.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 194aa MW: 21194 Da PI: 8.482

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016649791.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	56.7	6.9e-18	63	114	49	100
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael++++ e XP_016649791.1 63 VPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRGE 114 7999*******************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	8.579	15	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.1E-16	62	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MSREREISDE IGKKIKRETD ASSHHRMGRR HMLGPPGTLN TITPCAACKL LRRRCAQECS 60 FEVPESQRAD AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQSLQAELNA VRGEILKYKY 120 REANLLPSNS HHMALFSTSG AVSIASLPQT PQPPPPPPPP PPLPPTSSSS SMYTNQPSTA 180 DYSTLSSENV SFFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-22	36	128	3	124	LOB family transfactor Ramosa2.1
5ly0_B	2e-22	36	128	3	124	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016649791.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR938710	6e-34	CR938710.1 Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016649791.1	1e-142	PREDICTED: LOB domain-containing protein 15
Swissprot	Q8L5T5	5e-59	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A251QLQ4	1e-110	A0A251QLQ4_PRUPE; Uncharacterized protein
STRING	XP_009369256.1	1e-101	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	6e-60	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]