PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016649890.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 282aa    MW: 31704.9 Da    PI: 9.7837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016649890.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.000231712101155
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     rR +++ +++  L++l+ +      +K + a++L +A  YI  Lq
  XP_016649890.1 171 RRSQKLSDKITALQKLVSPY-----GKTDTASVLHEASIYIMLLQ 210
                     7999**************99.....9***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.156160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-8171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-5175215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MRNALLPSVP SHLYNFGNNI DVQMSNWDAQ MNMNRKLGFC MGSKAFESDN QNSRAGDDFS  60
LPLPLQSSSL LAYQPAYPSG AFRYHDGVSQ QPVLLDKKIS APQFEAATQN ARKRPIEVDE  120
LGGLVGDKTA LNEWNQNKRS KVTNSQQQWH QQFQETSMQQ QNNKKLHAPV RRSQKLSDKI  180
TALQKLVSPY GKTDTASVLH EASIYIMLLQ EQIQQNLLRM FSSSYKNAAV LHTQECGGRQ  240
MLDLRSKGLC LVPVSVTQKV TMEEGVDRAS TSRKIVIANN LY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016649890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016649890.10.0PREDICTED: transcription factor bHLH111-like isoform X4
TrEMBLA0A251QK350.0A0A251QK35_PRUPE; Uncharacterized protein
STRINGXP_008233662.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21340.11e-21bHLH family protein