PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016649915.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Protein Properties

Length: 148aa MW: 16686.1 Da PI: 4.6077

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016649915.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.1	2.7e-12	33	121	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgrsefelvv 94 f+ vlt+ + + + +lv+p kf ++ +s + t+ + +g+ We+ + ++s+ y ++Wk F+ +n+Lk+gD +vF+ l+ s+++lv+ XP_016649915.1 33 FDVVLTKTNINHLYQLVVPGKFSATLP---SCS-MPTVLTFRGKNWEMIY--HGSSS-YKRLDNWKVFAIDNNLKVGDACVFEqLEC-SSTRLVF 119 566777777788899*****97663...355.6688899*****..66665.55555******************5444.5555554 PP EE CS B3 95 kv 96 +v XP_016649915.1 120 RV 121 43 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.53E-17	29	122	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.5E-15	29	123	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.72E-17	31	125	No hit	No description
SMART	SM01019	3.8E-4	33	127	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.588	33	127	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-10	33	120	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MKGEPQMGDL LTSNPVIELE GDEFWPLSGK PFFDVVLTKT NINHLYQLVV PGKFSATLPS 60 CSMPTVLTFR GKNWEMIYHG SSSYKRLDNW KVFAIDNNLK VGDACVFEQL ECSSTRLVFR 120 VQILRGDIPS EFLDKLDGDN VDAPIVLE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016649915.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016649915.1	1e-107	PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X1
TrEMBL	M5X1G4	1e-97	M5X1G4_PRUPE; Uncharacterized protein
STRING	XP_008232178.1	1e-100	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9722	26	40