PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016650469.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 216aa    MW: 22306.2 Da    PI: 9.4128
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016650469.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.9e-07192214326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ Cr f+++G+Ck G++C + H+
  XP_016650469.1 192 QRVCR-FFESGHCKKGASCDYLHP 214
                     68999.8889*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.291189216IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5189215IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.73E-6190214IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4192214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5193214IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
PGFSGVPHSD PWRPPVPSNH TYIQPPAQPQ APWGVGVPDN QSAVPRTGQE NQNTSWVPMA  60
GNPNVTWGGP VPGNTNMNWG PPSQGPGWTA PGQGPVPGNA VTNWVPPGQG PPSVSANPGW  120
APPGQGPTVG NANPGWNAPN ATQNGDRFSN QRDRGSHGDP GFGGGKPWNR QSSFGGGGGG  180
GGGSSRPPFR GQRVCRFFES GHCKKGASCD YLHPDH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016650469.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650469.11e-147PREDICTED: zinc finger CCCH domain-containing protein 19-like, partial
TrEMBLA0A251MV391e-130A0A251MV39_PRUPE; Uncharacterized protein
STRINGXP_008236851.11e-147(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.12e-15nucleic acid binding;zinc ion binding;DNA binding