PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016650484.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 294aa    MW: 33653.4 Da    PI: 8.7227
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016650484.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.38.9e-1633118899
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       ++ ++ l+lpk+f++++ +  + s ++ l+ + g +W++kl  r++ g+++++kGW eF +   Lk g +++F+++g+s+f  +v +f++
  XP_016650484.1  33 DETSGNKTLRLPKTFLDKCAE--HLSDQIHLKLPCGSEWKIKL--RRCNGEVWFGKGWPEFSEFYSLKKGNSLLFRYEGNSKF--NVLIFDE 118
                     55566788***********74..47789***************..**********************************9999..9999986 PP
2B349.38.6e-162122931298
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++  + +p +f +++     e+ +++      rsW vkli++++ ++  l++GW+ F k+n Lk gD+++F+l+++++  lvv++fr
  XP_016650484.1 212 THLGMNIPASFRKHFTTM--EN-QIVRLWVGDRSWPVKLIFQRNNDQ--LSAGWRAFLKENSLKKGDVCIFELIDTNNVALVVSIFR 293
                     555688999997444322..22.355455688*********999998..9************************999999****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-2221119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-2023119IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-1525117No hitNo description
PROSITE profilePS5086313.83126119IPR003340B3 DNA binding domain
SMARTSM010191.2E-1027119IPR003340B3 DNA binding domain
PfamPF023621.5E-1232118IPR003340B3 DNA binding domain
PROSITE profilePS5086312.703201294IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-16203293IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-17204293IPR015300DNA-binding pseudobarrel domain
CDDcd100175.51E-18205293No hitNo description
SMARTSM010198.1E-7205294IPR003340B3 DNA binding domain
PfamPF023622.9E-13212293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MLPTMAAFLH QKVDHQGPKF RATTPHFFNM IADETSGNKT LRLPKTFLDK CAEHLSDQIH  60
LKLPCGSEWK IKLRRCNGEV WFGKGWPEFS EFYSLKKGNS LLFRYEGNSK FNVLIFDESG  120
TEMDYPITIT LIEETDEEDD VKSVESLEYF PTFPKTKHKT GPLLSPLPQE KSRTNPHSSS  180
RPSSSSSSKR VNVEAANEFV SSHPFFKVTL GTHLGMNIPA SFRKHFTTME NQIVRLWVGD  240
RSWPVKLIFQ RNNDQLSAGW RAFLKENSLK KGDVCIFELI DTNNVALVVS IFRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1517829321141B3 domain-containing transcription factor VRN1
4i1k_B2e-1517829321141B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016650484.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650484.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLM5VMB01e-120M5VMB0_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ023371e-121(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-22B3 family protein