PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016650834.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 274aa    MW: 31499.2 Da    PI: 9.838
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016650834.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.22.1e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +iifsstg+ly+y+s
  XP_016650834.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGRLYDYAS 59
                    8***********************************************86 PP
2K-box86.65.1e-29821711099
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      +++ + +q+e+a L+++++ Lq+ +R+l+Ge+L+ Ls k+Lq+Le+qLe+slk +R kK+++l ++i+el +k + +q+en++L kkl+
  XP_016650834.1  82 PASEVKFWQREAASLRQQLQYLQECHRQLMGEELSGLSAKDLQSLENQLETSLKGVRMKKDQILNDEIKELNQKGNLIQQENMELYKKLD 171
                     578899*********************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.099161IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-32290IPR002100Transcription factor, MADS-box
CDDcd002655.09E-45278No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-29323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2684170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.61286176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGRLYDYAST  60
SMKSVIDRFN KLKEEHHQLL NPASEVKFWQ REAASLRQQL QYLQECHRQL MGEELSGLSA  120
KDLQSLENQL ETSLKGVRMK KDQILNDEIK ELNQKGNLIQ QENMELYKKL DLVGKENAEL  180
LQKVYGARGV NKENKSSQPP YTITNGYDLQ TPIHLQLSQP QNQTQPRPQH NEIPAKGIKL  240
GYVLKLLTIC IPIAYYIDSY APKNERISKA YYFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-22182182MEF2C
5f28_B9e-22182182MEF2C
5f28_C9e-22182182MEF2C
5f28_D9e-22182182MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016650834.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640220.0KP164022.1 Pyrus pyrifolia clone PpAGL17 AGL17-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650834.10.0PREDICTED: MADS-box transcription factor 23 isoform X1
SwissprotQ6EP491e-103MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A251MUM31e-173A0A251MUM3_PRUPE; Uncharacterized protein
STRINGXP_008237086.11e-176(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-99AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]