PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016650853.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

HB-other

Protein Properties

Length: 982aa MW: 109155 Da PI: 9.3727

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016650853.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.2	2.1e-06	65	121	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +eL++ g+t +qV+ +F +R + +k XP_016650853.1 65 KRPRDLLNPKAIKYMQSVFSIKDAISKKESRELSALFGVTGTQVRDFFNSQRSRVRK 121 799**************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.961	62	122	IPR001356	Homeobox domain
SMART	SM00389	8.6E-4	64	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.55E-6	64	125	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-5	65	132	IPR009057	Homeodomain-like
CDD	cd00086	0.00102	65	121	No hit	No description
Gene3D	G3DSA:1.20.930.10	1.4E-5	222	313	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 982 aa Download sequence Send to blast
MEDLSEMEIG SSVESVQKFL DSQRQLFHSQ IDQLQKVVVT QCNLTGVNPL SQEMAAGALS 60 VKIGKRPRDL LNPKAIKYMQ SVFSIKDAIS KKESRELSAL FGVTGTQVRD FFNSQRSRVR 120 KLVQLSREKA TRSSEHKELQ DGVSTSSDPL TPIDPVPLNS VGPSSVEDAP SCSTQDDALS 180 GLDDLDKHFV DNIFNLMRKE ETFSGQVKLM EWILQIQNSS VLCWFLNTGG VMILATWLSQ 240 AAIEEQTSVL LVILKVLCHL PLHKALPVHM SAILQSVNRL RFYRTADVSN RARVLLSRWS 300 KLLARIQNMK KPNGMKTSSD SQHELVMLKQ SIDEVMGDES WKSNIDIPED IFATPFENAE 360 NSRRSEASEP LKLLTASSDE SNKKQILGVS SSQFRARRKV QLVEQPGQKS AGRSVQVTRA 420 TPVSKGRPMS ADDIQKAKMR AQFMQSKYGK SGSSNENKEL KTEGGNKLST SQASILPVVP 480 KVPVRLDIEE PKKPVTLLLK ERETPNRLET SLAPKLRMDL KESILEKCQR IRVPWKTPPE 540 IKLDPEWRVG GGENGKEIEV QRNRNRREKE TIYQRVQEIP SNPKEPWDIE MDYDDSLTPD 600 IPIEQPPDAD GTETQASLSR EGNNAQAWVA SSQGVNSAAS LAPALSQMNG ASAAAEPDLE 660 LLAVLLKNPE LVFALTSGQA ANLSSEDTVK LLDMIKSGGA GNLNGLGRKM EQRVEVSLPS 720 PTPSSNPGTN SQSGWRADAG WNAFPQQMAT TNKSLVSSAV RMIPSQRLST SQPAVPSYSP 780 DYFPPSMQTP AASEMVLTMK NTHLNNLSNS YNVAERQPNS FPPPLVTTPA RQQRQPQPLQ 840 QSRFSEPRLP THMYPSKPQM GKPGPPPPSP SDSWRARQDV PSNYRYLENQ NQYNASYGGP 900 SQQPQLLPGP SWEGNERVGG NQDFESWSPD NSPTRNPGYM YGREPRMNTA RDYMPDRSRQ 960 MNPSGYGGQN RLGNRWPDRG RQ

Sequence ? help Back to Top

Protein Sequence Length: 982 aa Download sequence Send to blast

MEDLSEMEIG SSVESVQKFL DSQRQLFHSQ IDQLQKVVVT QCNLTGVNPL SQEMAAGALS  60
VKIGKRPRDL LNPKAIKYMQ SVFSIKDAIS KKESRELSAL FGVTGTQVRD FFNSQRSRVR  120
KLVQLSREKA TRSSEHKELQ DGVSTSSDPL TPIDPVPLNS VGPSSVEDAP SCSTQDDALS  180
GLDDLDKHFV DNIFNLMRKE ETFSGQVKLM EWILQIQNSS VLCWFLNTGG VMILATWLSQ  240
AAIEEQTSVL LVILKVLCHL PLHKALPVHM SAILQSVNRL RFYRTADVSN RARVLLSRWS  300
KLLARIQNMK KPNGMKTSSD SQHELVMLKQ SIDEVMGDES WKSNIDIPED IFATPFENAE  360
NSRRSEASEP LKLLTASSDE SNKKQILGVS SSQFRARRKV QLVEQPGQKS AGRSVQVTRA  420
TPVSKGRPMS ADDIQKAKMR AQFMQSKYGK SGSSNENKEL KTEGGNKLST SQASILPVVP  480
KVPVRLDIEE PKKPVTLLLK ERETPNRLET SLAPKLRMDL KESILEKCQR IRVPWKTPPE  540
IKLDPEWRVG GGENGKEIEV QRNRNRREKE TIYQRVQEIP SNPKEPWDIE MDYDDSLTPD  600
IPIEQPPDAD GTETQASLSR EGNNAQAWVA SSQGVNSAAS LAPALSQMNG ASAAAEPDLE  660
LLAVLLKNPE LVFALTSGQA ANLSSEDTVK LLDMIKSGGA GNLNGLGRKM EQRVEVSLPS  720
PTPSSNPGTN SQSGWRADAG WNAFPQQMAT TNKSLVSSAV RMIPSQRLST SQPAVPSYSP  780
DYFPPSMQTP AASEMVLTMK NTHLNNLSNS YNVAERQPNS FPPPLVTTPA RQQRQPQPLQ  840
QSRFSEPRLP THMYPSKPQM GKPGPPPPSP SDSWRARQDV PSNYRYLENQ NQYNASYGGP  900
SQQPQLLPGP SWEGNERVGG NQDFESWSPD NSPTRNPGYM YGREPRMNTA RDYMPDRSRQ  960
MNPSGYGGQN RLGNRWPDRG RQ

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016650853.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016650853.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS isoform X3
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A251N6G8	0.0	A0A251N6G8_PRUPE; Uncharacterized protein
STRING	XP_008235014.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]