PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016650919.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 528aa    MW: 57750.9 Da    PI: 6.5772
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016650919.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.34.2e-16323369455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  XP_016650919.1 323 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 369
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.18E-20317385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.24E-16322373No hitNo description
PfamPF000101.2E-13323369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-21323377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MNRCVPDFEM EDDYSIPTSS APNRLRKSSL PDDEIMELLW QNGQVVMQSQ NQRPLPNNKK  60
SSQAPSKYDA VLPEDRDIPR PQPHPTAQNH QLFMHEEEMA SWLQYPLVDD PFCADLLYPD  120
SSTVHQANTN TPAAAELRPN PISAPPSKPP IHPPRRTELQ NFLHFSRTNN NKDRVSEAAP  180
SSSKSVVRES TTVVDSCDTP LVGHSSRALD SGLGGGGGVT AGAATSFVTV ATANAATSFP  240
GKEIMTCEMS LTSSPGGSSA SASASAEPIS SQKPRADEDR KRKGREAEDD GEFQSEDVEF  300
ESANGKKKAR GSTSTKRSRA AEVHNLSERR RRDRINEKMK ALQELIPRCN KSDKASMLDE  360
AIEYLKSLQL QVQMMSMGCG MVPMMFPGVQ QYMPMGMGMG MGMGMGMEMA GMTRPMMPFP  420
NVLAGSSMPT AAAHLGPRFP VPPFHMQPIP ANDPARVQAT NQSDHMLNAL AAQNPNQSRM  480
PNFADPYQQF FNPQQMQLPL QQNQAMAQPS SKPSSSKGPE THENHQSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327332ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016650919.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894260.0KP689426.1 Prunus pseudocerasus isolate Unigene11686 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650919.10.0PREDICTED: transcription factor PIF1-like
TrEMBLM5VNT30.0M5VNT3_PRUPE; Uncharacterized protein
STRINGEMJ029070.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-68phytochrome interacting factor 3-like 5