PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016650923.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 258aa    MW: 29479.1 Da    PI: 8.5522
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016650923.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.12e-2488144259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK  kg+e + sYY Ct++ C+ kkkv rs  d++++++ Y+g+Hnhe
  XP_016650923.1  88 EDGYSWRKYGQKGEKGNEGSTSYYMCTYPYCKRKKKVGRSL-DGQITQVAYKGTHNHE 144
                     7****************************************.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-2182145IPR003657WRKY domain
PROSITE profilePS5081117.14482146IPR003657WRKY domain
SuperFamilySSF1182903.01E-1885144IPR003657WRKY domain
SMARTSM007748.8E-2087145IPR003657WRKY domain
PfamPF031065.5E-1888144IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MESHEHLNNN FGAVNSSGTI MENWKRLCAM LQNSNEPPVV VGDLQRIMQE ESIESKQGAP  60
RLKKNFCQVY SSTKMTGAAE SKLVPISEDG YSWRKYGQKG EKGNEGSTSY YMCTYPYCKR  120
KKKVGRSLDG QITQVAYKGT HNHEERKDMN QSLSRSVWEL RGGAPLLSIT PDVLPSIGSS  180
VDNVDHEEPI LHEQKHDHDQ PSHENTNYGK PRQATKAIYS CKNQLDHWSR LTVFSYYFRD  240
RMVLFTHKPR LGDLISCF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016650923.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650923.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X2
STRINGXP_008236523.11e-158(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.16e-21WRKY DNA-binding protein 33