PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016651050.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 255aa MW: 28901.3 Da PI: 7.8391

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016651050.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.4	9.3e-12	85	136	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +h +Er+RR+++ + ++ Lr+ lP + k s ++ + ++v+YIk+Lq XP_016651050.1 85 KKIMHRDVERQRRQEMATLYASLRSQLPLE---YLKVQSISDHVHQTVNYIKHLQ 136 5789***********************9...7788***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.82E-7	82	140	No hit	No description
SuperFamily	SSF47459	3.4E-12	83	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.233	84	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.7E-9	86	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-8	86	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0093	90	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MDYIPSNTLQ FDQALQQADE LFQISXXXXX XHTTQENQAL PPTPSQDGRD LTCSPTSGQK 60 RKASISSSNI TFGEIDDEQN PKGNKKIMHR DVERQRRQEM ATLYASLRSQ LPLEYLKVQS 120 ISDHVHQTVN YIKHLQSNIQ ELHNNRDRLK RSCDISCSSS ASTAVTMENS LSPMKESVVL 180 VRPCKVGVEV VVNTPMKQRL PLSRLLEILK REGLSTISCI SAQVNEKLIY TIESQVSDGK 240 CIDMFELQQR LTKNL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016651050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016651050.1	0.0	PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH120
TrEMBL	A0A314ZIU0	1e-144	A0A314ZIU0_PRUYE; Transcription factor bHLH120
STRING	XP_009362828.1	1e-111	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF792	33	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	2e-43	bHLH family protein