PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016651116.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 770aa    MW: 85353.1 Da    PI: 9.2133
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016651116.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.17.3e-21677758186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ +ev +Li++r ++ +r++  k +++lWee+s+++ + g++rsp qCk+ w +l ++y+++ ++ k+  s  ++++pyf++++
  XP_016651116.1 677 KWKPEEVEKLIKMRGKLRSRFQVVKGRMALWEEISRNLLADGINRSPGQCKSLWASLVQKYEQESKSGKR--S--QKSWPYFEEMD 758
                     7**************************************************************9999997..3..556*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.109.1E-3846217IPR001279Metallo-beta-lactamase
SuperFamilySSF562812.95E-4450382IPR001279Metallo-beta-lactamase
PfamPF075211.3E-5323354IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.502670734IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-6671736IPR009057Homeodomain-like
SMARTSM007170.0012674736IPR001005SANT/Myb domain
PfamPF138372.4E-19675758No hitNo description
CDDcd122037.11E-19676738No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MLVSCFQTLM SLESKRLYLI PHLSKNGATK LKQLLLHMGM KITLVIPALD PGTPIFASSF  60
TMELIKKRLK EHGIFVPSRL KTFRTKRKFM AGPFEIEPVR VTHSIPDCCG LVLRCSDGTI  120
LHTGDWKIDE SPLDGRGFDR EALEELSKEG VTLMMSDSTN VLSPGRTTSE TSVADALLRH  180
ISAAKGRVIT TQFASNIHRL GSVKAAADFT GRKLVFVGMS LRTYLDAAWK DGKAPIDPSS  240
LVKVEDIDSY APKDLLIVTT GSQAEPRAAL NLASFGSSHS VKLTKEDIIL YSAKVIPGNE  300
SRVMKMLNRI SEIGSTIVMG KNEGLHTSGH GYRGELEEVL QIVKPQHFLP IHGELLFLKE  360
HELLGRSTGI RHTTVIKNGE MLGVSHLRNR RVLSNGFTLL GKENLQLKFS DGDKAFGTSS  420
ELCVDERLRV ALDGIIVVSM EILRPQNVNG LTENSIKGKI KITTRCLWVD KGKLIDALHK  480
AAHAALSSCP INCPLPHMER TVSEVLRKLV RKYSGKRPDV IAIAMENPAA VLADEVSVRL  540
SGKSHVGSEM STLRKVIDRH PYKNQSTRTQ ADEGKDNAHL QSTSQQDTEE SVLEDDGIEV  600
EVLLPEEDSA TSNSKSEKLS SDSEKSDDFW NAIVRLSTVD KSVVDKNGLA VQQEHLKKDG  660
PDSSEIPNPS KPVKRNKWKP EEVEKLIKMR GKLRSRFQVV KGRMALWEEI SRNLLADGIN  720
RSPGQCKSLW ASLVQKYEQE SKSGKRSQKS WPYFEEMDGA LSDSEEMATK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A4e-6351526101560RIBONUCLEASE J
5a0t_B4e-6351526101560RIBONUCLEASE J
5a0v_A4e-6351526101560RIBONUCLEASE J
5a0v_B4e-6351526101560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016651116.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016651116.10.0PREDICTED: ribonuclease J isoform X3
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A251P8T80.0A0A251P8T8_PRUPE; Uncharacterized protein
STRINGXP_008239449.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]