PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016651298.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-X1
Protein Properties Length: 1106aa    MW: 119980 Da    PI: 8.047
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016651298.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.73.9e-06296312319
        zf-NF-X1   3 kHkCqklCHeGpCppCp 19 
                     +H+C+++CH GpC+pC+
  XP_016651298.1 296 RHRCERTCHVGPCDPCQ 312
                     8***************6 PP
2zf-NF-X119.91.6e-06358375118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H C++ CH+GpC++C
  XP_016651298.1 358 CGNHACGEVCHPGPCGEC 375
                     ****************** PP
3zf-NF-X118.54.3e-06410433118
        zf-NF-X1   1 CG......kHkCqklCHeGpCppC 18 
                     CG      +H+Cq++CH+G+CppC
  XP_016651298.1 410 CGkslpceMHQCQEICHTGDCPPC 433
                     778888889*************** PP
4zf-NF-X117.31e-05512529118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H+C++lCH G CppC
  XP_016651298.1 512 CGQHSCESLCHSGHCPPC 529
                     ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.48E-7117186No hitNo description
PROSITE profilePS500168.689124185IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590127182IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.48127183IPR001841Zinc finger, RING-type
CDDcd060081.98E-5216277No hitNo description
SMARTSM004380.023239257IPR000967Zinc finger, NF-X1-type
PfamPF014228.3241256IPR000967Zinc finger, NF-X1-type
CDDcd060085.23E-11284332No hitNo description
PfamPF014222.1E-4285311IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0017294313IPR000967Zinc finger, NF-X1-type
CDDcd060082.36E-10348391No hitNo description
SMARTSM004387.2E-4358377IPR000967Zinc finger, NF-X1-type
PfamPF014220.0014358375IPR000967Zinc finger, NF-X1-type
CDDcd060089.39E-13406452No hitNo description
PfamPF014222.1E-4410433IPR000967Zinc finger, NF-X1-type
SMARTSM004388.3E-5416435IPR000967Zinc finger, NF-X1-type
CDDcd060081.96E-4464523No hitNo description
SMARTSM00438270474508IPR000967Zinc finger, NF-X1-type
PfamPF0142218474485IPR000967Zinc finger, NF-X1-type
CDDcd060083.09E-8502545No hitNo description
SMARTSM004380.002512531IPR000967Zinc finger, NF-X1-type
PfamPF014229.9E-5512529IPR000967Zinc finger, NF-X1-type
CDDcd060087.50E-6559607No hitNo description
SMARTSM004380.051569587IPR000967Zinc finger, NF-X1-type
PfamPF014226.6569586IPR000967Zinc finger, NF-X1-type
SMARTSM004385.8622652IPR000967Zinc finger, NF-X1-type
PfamPF014220.014622637IPR000967Zinc finger, NF-X1-type
CDDcd060083.81E-5650699No hitNo description
PfamPF0142264654680IPR000967Zinc finger, NF-X1-type
SMARTSM004380.011661682IPR000967Zinc finger, NF-X1-type
PfamPF014241.9E-6793857IPR001374R3H domain
Gene3DG3DSA:3.30.70.3301.0E-5896949IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1106 aa     Download sequence    Send to blast
MSSQVPNERR DRSRFPAQPP QPAQSARREW VPRGSNPTTA AVNPPLSFNS NIPNGSVGQP  60
NYSSAPSESR QQHRGNNASR GHMGRPMNHG RERGRSENQE EVRLKDSNLP QLVQEIQDKL  120
TKGTVECMIC YDMVRRSAPV WSCSSCYSIF HLNCIKKWAR APTSIDMSAG KNQGFNWRCP  180
GCQYVQLTSS KEIRYVCFCG KRTDPPSDLY LTPHSCGEPC GKQLERDVPG RGVSEDDLCP  240
HVCVLQCHPG PCPPCKAFAP PRLCPCGKKV ITTRCSDRTS VLTCGQHCNK LLDCLRHRCE  300
RTCHVGPCDP CQVLVDASCF CKKKVEVVLC GDMTVKGEVK AEDGVFSCSS TCGKKLTCGN  360
HACGEVCHPG PCGECNLMPT KIKTCHCGKT SLQGERQSCL DPVPTCSQTC GKSLPCEMHQ  420
CQEICHTGDC PPCLVKVSQK CRCGSTSRTV ECFKTTMEIE KFTCDKPCGR KKNCGRHRCS  480
ERCCPLSNSN NVLSGDWDPH FCSMPCGKKL RCGQHSCESL CHSGHCPPCL DTIFTDLTCA  540
CGRTSIPPPL PCGTPPPSCQ LPCSVPQPCG HSSSHSCHFG ECPPCSVPVA KECIGGHVVL  600
RNIPCGSRDI KCNKLCGKTR QCGMHACGRT CHPPPCDISS SVEPGTKTSC GQTCGAPRRD  660
CRHTCTALCH PYAPCPDNRC DFPVTITCSC GRITANVPCD SGGSNASFKA DTVYEASIIQ  720
RLPAPLQPIE SMTKKIPLGQ RKFMCDDECA KLERKRVLAD AFDIASPNLD ALHFGENSAV  780
SELLSDLFRR DAKWVLSVEE RCKYLVLGKS RGPTSGLRVH VFCPMLKEKR DVVRMIAERW  840
KLAVQSAGWE PKRFIVVHVT PKSKTPARVI GVKGTTTVNA PQPPAFDHLV DMDPRLVVSF  900
PDLPRDADIS ALVLRFGGEC ELVWLNDKNA LAVFNDPARA ATAMRRLDNG TLYHGAINVL  960
SNGSASVASS GSNAWVGLGT AKEGGVSTAL RGNPWKKAVI REPGWREDSW GDEEWAGGSA  1020
DVQASVWKKE APITASLNRW SVLDSDGALG SSSVSPSIED SGKQSLGGLN PALDSNASGS  1080
TSAGQQRGGN IADTSEVVDD WEKAYE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016651298.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016651298.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLM5WEA90.0M5WEA9_PRUPE; Uncharacterized protein
STRINGXP_008240286.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1