PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016651380.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Nin-like
Protein Properties Length: 912aa    MW: 101818 Da    PI: 6.475
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016651380.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK924.5e-29593644152
          RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     aek i+le+l+kyFs+++kdAA+++gvc T+LKriCRq+GIkRWP+Rkik++
  XP_016651380.1 593 AEKAITLEVLRKYFSGSLKDAANSIGVCSTTLKRICRQHGIKRWPSRKIKKV 644
                     5899**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.791583664IPR003035RWP-RK domain
PfamPF020428.1E-25597644IPR003035RWP-RK domain
SuperFamilySSF542772.01E-24809902No hitNo description
PROSITE profilePS5174527.902816899IPR000270PB1 domain
SMARTSM006669.3E-26816899IPR000270PB1 domain
PfamPF005641.3E-19817897IPR000270PB1 domain
CDDcd064074.79E-43818897No hitNo description
Gene3DG3DSA:3.10.20.2404.2E-23818896No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MDDDVLSPAT MMGAQPDSTT DLDFMDELFL EGCWLETTDG PEFPNQSHAN SGAHLNSSVF  60
WHTLEANGNL TMNPSENSNQ EVIQTPFFKQ LHEGPVNPQF PSQNMIDVDG YSGHSADPTI  120
KSYELNRRWW IGPLGNQGPA SSVMERLTRA LVCIRDVMRD KNVLVQVWVP VNKGGRNVLT  180
TNDDLFSLDS SCPRLSKYRD ISVNYQFSTG EDSTELVKGL PGRVFSGQVP EWTPDVRFFR  240
SDEYPRVDYA QRYDVRGTLA LPIFEQGSST CLGVIEVVTT TQKIKYQLEL ESVCKALEAV  300
DLQSSRNWST QNVKQGCVKP YQAALPEIRE VLRSACETHK LPLAQTWVSC IQQGKDGCRH  360
SDDNYVHCVS TVDHAFHVTD PYIEGFHEAC SEHHLLKGQG IVGKAFMTNQ PCFSDDITSC  420
VKTEYPLSHH ARMFGLHAAV AIRLRSMKTG STDFVLEFFL PVECRDPEEQ KKMLNSLSII  480
IQQICRSLRV VTDKELEEES DFPVSEMIVS SDPRPSGIAS FTEVQLSGND VSIFPMENPR  540
EVLGVKSSKL RQHQPDSNLK VGVKCGRECS ALGEGSFSSV GVSKTREKRR TRAEKAITLE  600
VLRKYFSGSL KDAANSIGVC STTLKRICRQ HGIKRWPSRK IKKVGHSLQK LQLVIDSVEG  660
ASGAFQINSF YTNFPELTSP NLSGTSPFST SKLSDQPKPT NLSPEGGVVS PQATASKSPS  720
SSCSQSSSSS QCCSSRTQQH RPTCNVTGDD DPIVGDNSGD GVLKRVRSEA ELHAFGQDRT  780
QLLPRSQSHK ILNELQKLQP IPPSLKNNGV AQEREVRRVK VAYGDEKTRF RMQNDWRYED  840
LVQEIAKRFS IEDMSKFYIK YLDDDSEWVL LTCDADLEEC IDVCRSSQSN TIKLSLHLSR  900
HHLERFIGTG GP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016651380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016651380.10.0PREDICTED: protein NLP4-like isoform X1
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A251P1R70.0A0A251P1R7_PRUPE; Uncharacterized protein
STRINGXP_008237985.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein