PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016651480.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 564aa    MW: 63062.4 Da    PI: 8.0068
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016651480.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12372416554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h + Er+RR+++N++f++L++llP+      +K +Ka++L+ A eY+ sL
  XP_016651480.1 372 HMISERKRREKLNESFHTLKSLLPPG-----TKKDKASVLTTAREYLISL 416
                     8899********************97.....8**************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.42E-12365421No hitNo description
PROSITE profilePS5088815.364367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-16369436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-15371434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-10372416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-14373422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MDTAFQLDEG SRASFLRLIM QSFGCFYICL WSYMPPPSNC LFFLDGVYDE ENQPSSSSGN  60
QARRLFDEYR QSIFNVVENE CVPGFAFRNS LPNLELQEID LQRLASSSVQ RQFYQTAVFM  120
GCKSGEIELG LSNVPQINIK RELMRNWLPE AFTRQLSPHT AVANRPNNPD QQNPLSSSSS  180
SFRSLSTMDS PEYSSILFNI PTTTTTSHIN IPEVFTQPAP NPLQPINIVT SLEPMPPLNI  240
ISSSITSPHQ QALQAFSRIR NTQFPNPEIE DAAMTRAILA VLSASPSSSS SHQPPPQTNV  300
PPSSSTAHFL TPKTSAFKTY NSSPLAPRTP KSANVRKQIM LKRSISFLRS LNLMRLREGI  360
QATRPTSSQL HHMISERKRR EKLNESFHTL KSLLPPGTKK DKASVLTTAR EYLISLRAQV  420
AELSKRNQQL EARLPPAAKE AYNEEAAAAA GSSNERVSVT LTRVASESTP DQDQQIFDLQ  480
VVLRSVECCT EDMVIRILEF LKRVNNVSLM SMEANTWMSG SDSNVNRVIL RLRVDQGTEW  540
DEAAFQEAVR RVVADLALNN CSNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375380ERKRRE
2376381RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016651480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016651480.10.0PREDICTED: putative transcription factor bHLH041 isoform X2
TrEMBLA0A251NGJ30.0A0A251NGJ3_PRUPE; Uncharacterized protein
STRINGXP_008242363.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-71bHLH family protein