PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016651549.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 188aa    MW: 21088.7 Da    PI: 4.545
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016651549.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3482.2e-15108185181
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvv 81 
                     ffk+ +++ +   + + l+ +f++eh ++  +s+  +l+ ++gr+W+vkl  ++++++ + +++GW +Fv++n+L  gD+++
  XP_016651549.1 108 FFKIAMHATYIHGHHMNLSSSFVKEHLNQ--TSTYAILRVSDGRTWSVKL--DQYGDArTRFQGGWMDFVRENNLVIGDVCL 185
                     899999999999**************656..567899*************..887777799*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.377143IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-9442IPR015300DNA-binding pseudobarrel domain
CDDcd100175.37E-9441No hitNo description
PfamPF023622.3E-7532IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-8543IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-19101186IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-19102186IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-12108185IPR003340B3 DNA binding domain
PROSITE profilePS5086312.647108188IPR003340B3 DNA binding domain
CDDcd100178.18E-16108184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEELGLGWTP FVQDNNLEVG DVCVFELIND VKPLFDVVLF CATKAANCTL SPADDDFGYD  60
FGDDSGDNSI EILDDFPPVP RKTREKPPHI SLESAVERAN SFASKYPFFK IAMHATYIHG  120
HHMNLSSSFV KEHLNQTSTY AILRVSDGRT WSVKLDQYGD ARTRFQGGWM DFVRENNLVI  180
GDVCLCVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17985PRKTREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016651549.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016651549.11e-140PREDICTED: B3 domain-containing protein REM9-like
TrEMBLA0A251NBE51e-107A0A251NBE5_PRUPE; Uncharacterized protein
STRINGEMJ032251e-106(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14896412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.16e-12related to vernalization1 1