PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016651750.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 443aa    MW: 48383.5 Da    PI: 8.3241
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016651750.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.1e-115277227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C+++ rtG C++G++C+F+H+p
  XP_016651750.1 52 GEPDCSYYIRTGLCRFGATCRFNHPP 77
                    5799********************97 PP
2zf-CCCH38.81.5e-1298122327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G++CkF+H++
  XP_016651750.1  98 QPECQYYLKTGTCKFGATCKFHHPR 122
                     799********************96 PP
3zf-CCCH34.34.1e-11147169527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C +++rtG+Ck+G++Ck++H++
  XP_016651750.1 147 ECAYYLRTGQCKFGSTCKYHHPQ 169
                     7********************97 PP
4zf-CCCH37.93e-12304330127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G+ C+F+H++
  XP_016651750.1 304 PGQPECQFYMKTGDCKFGAVCRFHHPR 330
                     5789*********************96 PP
5zf-CCCH40.15.9e-13350376127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_016651750.1 350 PGEPLCIFYSRYGICKFGPSCKFDHPM 376
                     589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2675078IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-55077IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-85277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-55578IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-45676IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15995123IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-695122IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-1098122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-699124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-5101122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.018142170IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4142169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6146170IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-9147169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4148168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596303331IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6303330IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-9305330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5307333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-5309331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709349377IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7349376IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10351376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5352376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4354374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDFDAGIPMS RAAAPVTDAP SLSPSLTQDA MWQMNLRSSE TLEPGSYPER TGEPDCSYYI  60
RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQYYLKTGTC KFGATCKFHH  120
PRDKAGIAGR VALNILGYPL RPQNEIECAY YLRTGQCKFG STCKYHHPQP TNMMVSLRGS  180
PVYPTVQSPT TPGQQSYAGG ITNWSRASFI PSPRWQAPSS YAPLIVPQGV VSVPGWSAYS  240
GQIGSVSSPE SQQQPVGNSQ IYGTSRQGEP ENSGSQGTFS PYRSGSIPVG FYALQRENVF  300
PERPGQPECQ FYMKTGDCKF GAVCRFHHPR ERLIPTPDCV LSPIGLPLRP GEPLCIFYSR  360
YGICKFGPSC KFDHPMGIFT YNPNASSSAD APARRLLGST SATTSLNLSS EGLVEAGSAN  420
PRRLSLSEPR QIPSGDDNID TED
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016651750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016651750.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLM5VZ660.0M5VZ66_PRUPE; Uncharacterized protein
STRINGXP_008218439.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1