PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016652256.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 488aa MW: 53450.5 Da PI: 7.6754

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016652256.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.8	1.6e-15	24	68	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ XP_016652256.1 24 RERWTHEEHNKFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.05E-16	18	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.415	19	73	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-8	21	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.9E-16	22	71	IPR006447	Myb domain, plants
SMART	SM00717	2.2E-12	23	71	IPR001005	SANT/Myb domain
Pfam	PF00249	6.9E-13	24	67	IPR001005	SANT/Myb domain
CDD	cd00167	4.73E-9	26	69	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MEPHSSREDL VIKARKPYTI TKQRERWTHE EHNKFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEAHVNG VPIGQSIGID IPPPRPKRKP CNPYPRKSSS AASTCAALHV 120 GAKVGKLLSS ASSSCYKQVV DLEKEPLHER PFGEEKANNA ENQVANWAEV FTLLQDGHCS 180 SVSSANNNSI PSQVALGNAC TLRDATNESH VTINLKGNQN LKKIDAKMIV GDNGTSGAPK 240 SGNTNNAFHK ELVQGEKISS LIVSSLLQNP AAHAVASSTA AFWPYANAKN RKDPPSMAAI 300 AAATVTAATA WSAVHRLLPR QTDFRCSPIS MTGVPVPSMD TGQAPPAKRE KGESSLQIPS 360 LQDQQLDSRH TEAVEAQHSN IAKANTDDEK DVASTEEVHD SNHAKSRKQQ VDRSLYGSNT 420 PSDSEDETAA IEKNEKGREE LKEPNASHPA AESSQRRCRC VSNMYDSWKE VSEEDLKIKG 480 HQNDGMED

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MEPHSSREDL VIKARKPYTI TKQRERWTHE EHNKFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KLEKEAHVNG VPIGQSIGID IPPPRPKRKP CNPYPRKSSS AASTCAALHV  120
GAKVGKLLSS ASSSCYKQVV DLEKEPLHER PFGEEKANNA ENQVANWAEV FTLLQDGHCS  180
SVSSANNNSI PSQVALGNAC TLRDATNESH VTINLKGNQN LKKIDAKMIV GDNGTSGAPK  240
SGNTNNAFHK ELVQGEKISS LIVSSLLQNP AAHAVASSTA AFWPYANAKN RKDPPSMAAI  300
AAATVTAATA WSAVHRLLPR QTDFRCSPIS MTGVPVPSMD TGQAPPAKRE KGESSLQIPS  360
LQDQQLDSRH TEAVEAQHSN IAKANTDDEK DVASTEEVHD SNHAKSRKQQ VDRSLYGSNT  420
PSDSEDETAA IEKNEKGREE LKEPNASHPA AESSQRRCRC VSNMYDSWKE VSEEDLKIKG  480
HQNDGMED

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016652256.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016652256.1	0.0	PREDICTED: protein LHY-like isoform X2
TrEMBL	A0A251QIH8	0.0	A0A251QIH8_PRUPE; Uncharacterized protein
STRING	EMJ20198	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46830.1	3e-56	circadian clock associated 1