PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016652295.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 130aa    MW: 15646.1 Da    PI: 10.5375
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016652295.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-141057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll ++++  G g W+ ++ +  ++R++k+ck+rw++yl
   XP_016652295.1 10 KGAWTREEDDLLRQCIENQGEGKWHQVPYKARLNRCRKSCKLRWLNYL 57
                     79*********************************************7 PP
2Myb_DNA-binding29.51.7e-0963102146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg + ++E +l+++++k+lG++ W++Iar+       +++k++w++
   XP_016652295.1  63 RGEFAEDEVDLIIRLHKLLGNR-WSLIARRTA-----NDVKNYWNT 102
                      78999*****************.****97666.....*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.604561IPR017930Myb domain
SuperFamilySSF466899.73E-237100IPR009057Homeodomain-like
SMARTSM007179.1E-12959IPR001005SANT/Myb domain
PfamPF002492.3E-131057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-211164IPR009057Homeodomain-like
CDDcd001672.26E-71257No hitNo description
PROSITE profilePS5129411.11262108IPR017930Myb domain
SMARTSM007175.9E-662106IPR001005SANT/Myb domain
PfamPF002495.0E-863102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-1665104IPR009057Homeodomain-like
CDDcd001679.13E-668104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MEGYDLGVRK GAWTREEDDL LRQCIENQGE GKWHQVPYKA RLNRCRKSCK LRWLNYLKPN  60
IKRGEFAEDE VDLIIRLHKL LGNRWSLIAR RTANDVKNYW NTRLWMDSRL KKVKDKPQET  120
IKTIVIRPQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-17101047104B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016652295.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9364921e-165GU936492.1 Prunus persica cultivar Jiaozhou blood flesh R2R3 MYB transcription factor 10 (MYB10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016652295.11e-91PREDICTED: transcription factor MYB114-like
SwissprotQ9FNV95e-49MY113_ARATH; Transcription factor MYB113
TrEMBLA0A0A7W5852e-80A0A0A7W585_PRUAV; Myb10 V1-3
STRINGEMJ177293e-80(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-51myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]