PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016652431.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 219aa MW: 24769.3 Da PI: 9.5157

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016652431.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.5	7e-29	126	179	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+av LGG+e+AtP ++lelm+vk+Ltl+hv+SHLQ YR+ XP_016652431.1 126 PRMRWTTNLHARFVHAVYLLGGHERATPESLLELMDVKDLTLAHVRSHLQIYRT 179 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.94E-14	123	179	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-24	124	179	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.4E-21	126	179	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MAFMGSFDPS DPTVDPWGFF GTLPDIYGLV ADISQCICCT VQYVYCLRHA DNPFKASLLP 60 AIFLLCLGGS KLSNNRRNAN TTDNNILRKP LDSNSSTSTS TITSTSRSSP LFQAQRGLLR 120 SRWRAPRMRW TTNLHARFVH AVYLLGGHER ATPESLLELM DVKDLTLAHV RSHLQIYRTV 180 FIANRAAAFS GQSTFSSFLF FNLFEKQFIN KTEQYDRVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	127	179	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	127	179	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	127	179	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	127	179	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	127	179	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	127	179	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	127	179	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	127	179	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	127	179	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	127	179	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	127	179	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	127	179	4	56	Protein PHOSPHATE STARVATION RESPONSE 1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016652431.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016652431.1	1e-163	PREDICTED: uncharacterized protein LOC103343052
STRING	XP_008244950.1	1e-116	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-35	G2-like family protein