PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016652765.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 703aa MW: 81519.5 Da PI: 9.1967

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016652765.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.1	1.1e-21	21	106	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 kfYn+YA+ vGFs+r+sk +k+ + g+ +r fvCs egkre++k + + +++raetr gC a++k++ + ++k++vt+++ eH+H XP_016652765.1 21 KFYNAYAYGVGFSIRRSKFHKE-KCGKLRDRLFVCSAEGKREKNKCD-GSVKSHRAETRFGCLARMKISCRLNDKYCVTEFVPEHTHV 106 6***************9998.6677**************99.9999*********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-17	21	106	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-30	230	324	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.804	510	546	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.9E-5	520	545	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.4E-5	521	548	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MQKKLVPEIG MEFETEEEAF KFYNAYAYGV GFSIRRSKFH KEKCGKLRDR LFVCSAEGKR 60 EKNKCDGSVK SHRAETRFGC LARMKISCRL NDKYCVTEFV PEHTHVTSSP CKTHFFRSHR 120 NMSLAQIVEA DMADSSGIAP KATLELLSRQ AGGRQNLGFI PVDYKNYLRS KRTREMRVGD 180 TGGLLEYLQQ MQLNDPNFFY AIQVDEDDMI TNIFWADARM MVDYDYFGDV VCFDTTYRKN 240 KEGRPFAMFV GVNNHRQTVV FGAALLYAET ADTFIWLFDT FVKAMSGKKP ISILTDQDAA 300 MAKALLSEWP ETCHRLCIWH IYQNAAKHLS NAFEKFKNFT KDFGRCIYDY EDEDDFINAW 360 NNMLEKYNLK DNDWLRRLFN IKEQWALVYG RQTFCADITT TQRSESMNSA LKKYVSYKYD 420 LLRFFQHFQR LVEDRRYQEL KAEFRASQSS PALSFPVEIL KHASNIYTPE VFKLFQDELC 480 KAHDCVLKFN GEIGSISKYE VIPHKKYWHH TVTFDSIDNT VLCSCKKYEF AGILCAHALK 540 VLSTRNIKNI PAQYILKRWT KNIKAKSTKS TCNVSSENDS KVEIVRRYRE LCRLHTQLAT 600 RASESKDAYE TAILGLNNTL RDVDACLKKK ASQEPTQVIS KTTSASKLNE YICIDDDIIK 660 VRGIKTKTKV VGNSKRPKNA LEKLTKKKKP RNKEECALLE QVF

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MQKKLVPEIG MEFETEEEAF KFYNAYAYGV GFSIRRSKFH KEKCGKLRDR LFVCSAEGKR  60
EKNKCDGSVK SHRAETRFGC LARMKISCRL NDKYCVTEFV PEHTHVTSSP CKTHFFRSHR  120
NMSLAQIVEA DMADSSGIAP KATLELLSRQ AGGRQNLGFI PVDYKNYLRS KRTREMRVGD  180
TGGLLEYLQQ MQLNDPNFFY AIQVDEDDMI TNIFWADARM MVDYDYFGDV VCFDTTYRKN  240
KEGRPFAMFV GVNNHRQTVV FGAALLYAET ADTFIWLFDT FVKAMSGKKP ISILTDQDAA  300
MAKALLSEWP ETCHRLCIWH IYQNAAKHLS NAFEKFKNFT KDFGRCIYDY EDEDDFINAW  360
NNMLEKYNLK DNDWLRRLFN IKEQWALVYG RQTFCADITT TQRSESMNSA LKKYVSYKYD  420
LLRFFQHFQR LVEDRRYQEL KAEFRASQSS PALSFPVEIL KHASNIYTPE VFKLFQDELC  480
KAHDCVLKFN GEIGSISKYE VIPHKKYWHH TVTFDSIDNT VLCSCKKYEF AGILCAHALK  540
VLSTRNIKNI PAQYILKRWT KNIKAKSTKS TCNVSSENDS KVEIVRRYRE LCRLHTQLAT  600
RASESKDAYE TAILGLNNTL RDVDACLKKK ASQEPTQVIS KTTSASKLNE YICIDDDIIK  660
VRGIKTKTKV VGNSKRPKNA LEKLTKKKKP RNKEECALLE QVF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016652765.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016652765.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	M5XIP4	0.0	M5XIP4_PRUPE; Uncharacterized protein
STRING	XP_008246048.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-142	FAR1-related sequence 5