PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016652828.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 738aa    MW: 82646.3 Da    PI: 5.3222
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016652828.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS382.55.1e-1173637331373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+avs++d + a++lL+++++++sp gd  qRla++f+++L+arla++++++y al++++ts    ++ l+a++ +  ++P++k++ 
  XP_016652828.1 363 LRTLLILCAQAVSADDRRTANELLKQIRQHSSPFGDGSQRLAHCFANGLEARLAGTGTQIYTALSSKRTS---AADMLKAYQNYIAACPFMKVAI 454
                     5789************************************************************999999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN++I + +e++e++HiiDf+i +G+QWpaL++ L+ R++gpp+lRiTg++ p+sg   +e+++etg+rLak++e+ +vpfe+++ +ak++e+
  XP_016652828.1 455 IFANHMISKLAEKAETLHIIDFGILYGFQWPALIHCLSRRAGGPPKLRITGIELPQSGfrPEERVQETGHRLAKYCERYNVPFEYTA-IAKKWET 548
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++eeL+vk++E+laVn+ ++ ++llde+v+++s+rd+vL+l+++++P+++ +   + ++ ++ F++rf eal ++salfd++++++pre+  r 
  XP_016652828.1 549 IQIEELKVKRDEVLAVNCLFRFKNLLDETVAVNSPRDAVLNLIRRMNPDIFAHGIINGSYHAPFFVTRFREALFHFSALFDMFDTNVPREDLMRL 643
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + E+e+lgre+vn +aceg+er+ r et+++W+ r ++aGFk++pl+ + +++ ++ ++  + + + v+e+ +++++gWk+r ++  S+W
  XP_016652828.1 644 MFEEEFLGREVVNTIACEGSERVVRPETYKQWQVRNMRAGFKQLPLDRELMNKLRMKVKLGYHRDFVVDEDGNWMLQGWKGRIMYCSSCW 733
                     **************************************************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.624337714IPR005202Transcription factor GRAS
PfamPF035141.8E-114363733IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MDPGFSQLPS SSRSSGDQTL SPNFNEYPSS DPFVDLSFLD QNPSNSALSP SLSPEGDDSD  60
YSDSVLKYIN QVLMEEDMVT KPCMFHDPLA VQAAEKSLYE VLGEKYPPSP DQHPLNIESP  120
DCPFSVTFSD FSAINSSSSS TSHSVDSRWS NADVIENKPS ILETPIPDNF VFQSTSKPRS  180
QLSSNGNGSG NGLVGSYMSE LMVSNLFSES ELILQFNRGV EEASKFLPRG QLIVDVENNK  240
PYTVASGKAE DVVVKTEKDD IELLATSSRG KKSHEREDTD LEDGRSNKQS AVYLEDTEAE  300
LSEIFDKVLL CGGGKAEPFV CGGEEVCQDE ANKALQQNGQ SVGTGNGKTR AKKKGDKKEV  360
VDLRTLLILC AQAVSADDRR TANELLKQIR QHSSPFGDGS QRLAHCFANG LEARLAGTGT  420
QIYTALSSKR TSAADMLKAY QNYIAACPFM KVAIIFANHM ISKLAEKAET LHIIDFGILY  480
GFQWPALIHC LSRRAGGPPK LRITGIELPQ SGFRPEERVQ ETGHRLAKYC ERYNVPFEYT  540
AIAKKWETIQ IEELKVKRDE VLAVNCLFRF KNLLDETVAV NSPRDAVLNL IRRMNPDIFA  600
HGIINGSYHA PFFVTRFREA LFHFSALFDM FDTNVPREDL MRLMFEEEFL GREVVNTIAC  660
EGSERVVRPE TYKQWQVRNM RAGFKQLPLD RELMNKLRMK VKLGYHRDFV VDEDGNWMLQ  720
GWKGRIMYCS SCWVPSRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-5537073525379Protein SCARECROW
5b3h_D4e-5537073525379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016652828.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016652828.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A314ZFC90.0A0A314ZFC9_PRUYE; Scarecrow-like protein 14
STRINGXP_008223833.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]