PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00001.1.g00340.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 247aa MW: 26903.6 Da PI: 9.9788

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00001.1.g00340.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.5	4.5e-16	171	217	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 +r++r++kNRe+A rsR+R++a++ eLe+k++ LeaeN++L+ +l++l Zjn_sc00001.1.g00340.1.am.mk 171 RRQKRMIKNRESAARSRARRQAYTNELENKIALLEAENERLR-KLKML 217 79****************************************.67666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.4E-9	167	245	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.185	169	213	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.2E-13	171	213	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.5E-13	171	213	No hit	No description
SuperFamily	SSF57959	2.25E-10	171	213	No hit	No description
PROSITE pattern	PS00036	0	174	189	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MASLGGGSGG GPLSCQGSVY SLTLTEAESQ LGVPLRSMNL DDLLRTVLPT VPEPATGGKK 60 TVDEVWRDIQ SAGSGRQLST IGEMTLEDFL SRAGMAVDGG VGCVGPHWLH QYQLPQHQYA 120 PLPPPLGMGA AQSVTVHRDG LGDGVGGFLS QSQVGGRKRG ADGVVERTVE RRQKRMIKNR 180 ESAARSRARR QAYTNELENK IALLEAENER LRKLKMLEPL EPPPLEHERR PVPEPKKQLR 240 RTNSARF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT033247	4e-51	BT033247.1 Zea mays full-length cDNA clone ZM_BFb0124H20 mRNA, complete cds.
GenBank	BT035906	4e-51	BT035906.1 Zea mays full-length cDNA clone ZM_BFb0087N11 mRNA, complete cds.
GenBank	BT055475	4e-51	BT055475.1 Zea mays full-length cDNA clone ZM_BFb0325H08 mRNA, complete cds.
GenBank	EU975790	4e-51	EU975790.1 Zea mays clone 500961 EEL mRNA, complete cds.
GenBank	KJ728208	4e-51	KJ728208.1 Zea mays clone pUT6484 bZIP transcription factor (bZIP92) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799932.1	1e-89	ABSCISIC ACID-INSENSITIVE 5-like protein 5
Refseq	XP_025799933.1	1e-89	ABSCISIC ACID-INSENSITIVE 5-like protein 5
Refseq	XP_025799934.1	1e-89	ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9C5Q2	9e-54	AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBL	A0A1E5UQI4	8e-98	A0A1E5UQI4_9POAL; Uncharacterized protein
STRING	Sb02g043620.1	3e-84	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4441	33	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	5e-35	bZIP family protein

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153]