PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00001.1.g00610.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 303aa    MW: 33673.1 Da    PI: 5.0831
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00001.1.g00610.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.42e-51251511129
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                                     +p+GfrFhPtdeelv++yL +kv +  +++  vi++vd++k+ePw+Lp k+k +ekewyfF ++ +ky+tg r+nrat+
  Zjn_sc00001.1.g00610.1.sm.mkhc  25 MPAGFRFHPTDEELVSHYLIRKVLNCLFTC-LVIADVDLNKWEPWELPGKAKMGEKEWYFFWHKGRKYPTGMRTNRATA 102
                                     699************************999.78***************99999************************** PP

                             NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                     sgyWkatg+dke+++ +g lvg+kktLvf+ grap+g+kt Wvm eyrle
  Zjn_sc00001.1.g00610.1.sm.mkhc 103 SGYWKATGRDKEIFR-GGVLVGMKKTLVFHLGRAPRGKKTAWVMREYRLE 151
                                     ***************.********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-6220174IPR003441NAC domain
PROSITE profilePS5100555.4825174IPR003441NAC domain
PfamPF023656.1E-2626150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSEVSAINSQ GGEVEEEEQQ QQLVMPAGFR FHPTDEELVS HYLIRKVLNC LFTCLVIADV  60
DLNKWEPWEL PGKAKMGEKE WYFFWHKGRK YPTGMRTNRA TASGYWKATG RDKEIFRGGV  120
LVGMKKTLVF HLGRAPRGKK TAWVMREYRL EGKLPPNLTP AAKDEWAVCR VFNKNLAAKP  180
GQNPASSSAP PAAGTMERPG SPFFLDDLLN PTELPPPLVD ADPPFPDDLI DLQGGATAGT  240
SSSGYQQQVK TEQPAALQST PPLQLQEDPC YSYFGEAGAG SVRPLEDDLW PDGVTDYSNM  300
WNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-52141796170NO APICAL MERISTEM PROTEIN
1ut4_B3e-52141796170NO APICAL MERISTEM PROTEIN
1ut7_A3e-52141796170NO APICAL MERISTEM PROTEIN
1ut7_B3e-52141796170NO APICAL MERISTEM PROTEIN
4dul_A3e-52141796170NAC domain-containing protein 19
4dul_B3e-52141796170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0961831e-128FP096183.1 Phyllostachys edulis cDNA clone: bphyem213g04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461233.12e-97NAC domain-containing protein 79
SwissprotQ9SQQ62e-75NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A0A9IAM41e-109A0A0A9IAM4_ARUDO; Uncharacterized protein
STRINGPavir.Ba00246.1.p3e-99(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.12e-76NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]