PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00001.1.g00620.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 234aa MW: 25669.9 Da PI: 5.4073

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00001.1.g00620.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.2	4e-33	2	77	54	129
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdkev++ +g l g+kktLvf++grap+g+kt Wvmheyrle Zjn_sc00001.1.g00620.1.sm.mk 2 GEKEWYFFCRKDRKYPTGMRTNRATASGYWKATGKDKEVFRGSGVLAGMKKTLVFHQGRAPRGKKTAWVMHEYRLE 77 579************************************99*****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.41	1	100	IPR003441	NAC domain
SuperFamily	SSF101941	9.68E-38	2	100	IPR003441	NAC domain
Pfam	PF02365	4.8E-16	6	76	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MGEKEWYFFC RKDRKYPTGM RTNRATASGY WKATGKDKEV FRGSGVLAGM KKTLVFHQGR 60 APRGKKTAWV MHEYRLEGER PPNLPAGAKD EWAVCRVFNK DLSAKPGLLQ QTASTSSAPA 120 AAGTMDSNDS LFFLDDPTEL MAMPPLVDPA PFPDDLVGLK GATAGASSSG NRQQVKTQEQ 180 PAAQNAPPLQ LQEDPYSYLA QPPPDEVGAD GVRSLEDDLL WPDGVTDYSD MWKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-30	1	105	68	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-30	1	105	68	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-30	1	105	68	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-30	1	105	68	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-30	1	105	71	173	NAC domain-containing protein 19
3swm_B	2e-30	1	105	71	173	NAC domain-containing protein 19
3swm_C	2e-30	1	105	71	173	NAC domain-containing protein 19
3swm_D	2e-30	1	105	71	173	NAC domain-containing protein 19
3swp_A	2e-30	1	105	71	173	NAC domain-containing protein 19
3swp_B	2e-30	1	105	71	173	NAC domain-containing protein 19
3swp_C	2e-30	1	105	71	173	NAC domain-containing protein 19
3swp_D	2e-30	1	105	71	173	NAC domain-containing protein 19
4dul_A	2e-30	1	105	68	170	NAC domain-containing protein 19
4dul_B	2e-30	1	105	68	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269\|PubMed:27021284}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804669.1	2e-67	NAC domain-containing protein 87-like
Swissprot	Q9SQQ6	2e-56	NAC46_ARATH; NAC domain-containing protein 46
TrEMBL	A0A0A9IAM4	9e-75	A0A0A9IAM4_ARUDO; Uncharacterized protein
STRING	Pavir.Ba00246.1.p	5e-68	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP27555	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04060.1	2e-57	NAC domain containing protein 46

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Oda-Yamamizo C, et al. Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves. Sci Rep, 2016. 6: p. 35125 [PMID:27759025] O'Shea C, et al. Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1. J. Biol. Chem., 2017. 292(2): p. 512-527 [PMID:27881680]