PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00001.1.g01050.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 170aa    MW: 18536.8 Da    PI: 8.0425
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00001.1.g01050.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-1970119356
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   y+G+r+++ +g+W+AeIrdp +    +r++lg+f tae Aa+a+++a+++++g+
  Zjn_sc00001.1.g01050.1.sm.mk  70 YRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAEAAARAYDRAARRIRGA 119
                                   9*******.**********843...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-3669132IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-2269127IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.6E-3269127IPR001471AP2/ERF domain
PROSITE profilePS5103224.59269126IPR001471AP2/ERF domain
PRINTSPR003671.8E-117081IPR001471AP2/ERF domain
CDDcd000181.32E-1570127No hitNo description
PfamPF008471.2E-1270118IPR001471AP2/ERF domain
PRINTSPR003671.8E-1192108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MCGGAIISEY IPHRPTGGGS SKRSLCATDF WPDAAADFDV DPVNPECATG AAYPVADQEP  60
ARKRERKTMY RGIRRRPWGK WAAEIRDPAK GARVWLGTFA TAEAAARAYD RAARRIRGAK  120
AKVNFPNEDP PPDNEYDDHV MMPVIYDAVL GLSNLSTDGA RGGTDPALFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2270126663ATERF1
3gcc_A1e-2270126663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16068ARKRERKTM
26276KRERKTMYRGIRRRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9768704e-90EU976870.1 Zea mays clone 992413 mRNA sequence.
GenBankKJ7283484e-90KJ728348.1 Zea mays clone pUT6630 AP2-EREBP transcription factor (EREB200) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921624.16e-51ethylene-responsive transcription factor ERF071
SwissprotP427368e-37RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A1E5VCJ37e-49A0A1E5VCJ3_9POAL; Uncharacterized protein
STRINGOPUNC07G24590.15e-46(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115852836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-21ERF family protein
Publications ? help Back to Top
  1. Bueso E, et al.
    The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene.
    Plant J., 2007. 52(6): p. 1052-65
    [PMID:17931347]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen YC, et al.
    Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance.
    Sci Rep, 2014. 4: p. 5584
    [PMID:24998294]
  4. Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB
    Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis.
    New Phytol., 2015. 208(2): p. 442-55
    [PMID:25988998]
  5. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  6. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  7. Liu W, et al.
    Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency.
    Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868
    [PMID:28390898]
  8. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]