PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00001.1.g05070.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 221aa    MW: 22944 Da    PI: 8.9669
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00001.1.g05070.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001283105123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C+ Cgk++ +   L  H  +H
  Zjn_sc00001.1.g05070.1.am.mk  83 YECSVCGKVYASYQALGGHKTSH 105
                                   99********9999998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.2E-1383107IPR007087Zinc finger, C2H2
SMARTSM003550.0483105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.03483110IPR007087Zinc finger, C2H2
SuperFamilySSF576672.63E-883105No hitNo description
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SuperFamilySSF576672.63E-8135162No hitNo description
PfamPF139125.8E-10140164IPR007087Zinc finger, C2H2
SMARTSM003551.9140162IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.891140162IPR007087Zinc finger, C2H2
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MALDYALDVS SKPPASPPRV DSWGSGGRRS KRRAGSADAV VGPQSEDEYL ALCLLMLSRG  60
VRGDDDSPAT RSVGAAKASN QGYECSVCGK VYASYQALGG HKTSHRKPPT PPRPQPPALA  120
PSEVPPSSGG GAAPAEEKLH QCGLCLRTFP SGQALGGHKR LHYEGDGVKA KDPTAKGRPV  180
AASVLRDFDL NIPVAAATAI GDEAGEIAPP EAKRARMLLM V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460947.12e-60zinc finger protein 1
TrEMBLA0A3L6T8Z97e-65A0A3L6T8Z9_PANMI; Zinc finger protein 1-like
STRINGPavir.J16973.1.p1e-61(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-24C2H2 family protein