PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00001.1.g06700.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 906aa MW: 102283 Da PI: 6.778

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00001.1.g06700.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.4	4.4e-27	119	206	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 +fYn+YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+++++++++gk+++t Zjn_sc00001.1.g06700.1.sm.mkhc 119 EFYNAYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KEAKCPRPETRIGCPASMTIRLTTNGKYRLT 195 6******************97766.************9999.999************************ PP FAR1 80 kleleHnHela 90 ++ +HnH+la Zjn_sc00001.1.g06700.1.sm.mkhc 196 EFIPNHNHQLA 206 *******97 PP
2	FAR1	82.3	8.3e-26	248	334	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 +fY+ YA ++GF vrk++++ + ++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a+++++++ +gk++vt Zjn_sc00001.1.g06700.1.sm.mkhc 248 EFYSMYAGKIGFGVRKASMTVN-ADNVITRRMFVCSKEGFREKKRGA-RRVQKPRPETRTGCPACMVIRLTANGKYHVT 324 6**************99988.7777************9998.9999*********************** PP FAR1 80 kleleHnHel 89 ++++ HnH+l Zjn_sc00001.1.g06700.1.sm.mkhc 325 EFVTFHNHQL 334 ******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-24	119	206	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	3.3E-22	248	334	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-22	451	544	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.546	719	766	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.6E-8	736	765	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-6	741	768	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 906 aa Download sequence Send to blast
MPSGSGSEKN DPQIIPGSAA APSLVQTFQP ARATGSAAAD PRLSQQSWPG HAVLLRPCAP 60 WPPRDSSVPQ LQDTANPQQN GDAGAEVAAA DVNPAIDSCD ENMVPKINMI FEGENDAYEF 120 YNAYAEKVGF FVRRSTLWTT SKNIITRRTF VCSREGFREK KKGAKEAKCP RPETRIGCPA 180 SMTIRLTTNG KYRLTEFIPN HNHQLATAST IHMLKEKKIR RKARAVRENL VDDTVRTPEF 240 ENEDEAYEFY SMYAGKIGFG VRKASMTVNA DNVITRRMFV CSKEGFREKK RGARRVQKPR 300 PETRTGCPAC MVIRLTANGK YHVTEFVTFH NHQLGAAAAS NLVIVSQSAE NDQLDGVHLV 360 DRSPGDPIHK QNLINENVIG YTPEGRSCKR YKLTKTPHHG DVGAILEYLQ KMQHDNPSFY 420 YAIKSDEDGN FTNFFWADSK SIIDFDHFGD VVCLDSGYAL QDYGRPLALF TGLNHHKQTV 480 IFGAAMLYDE SNEAFKWLLD TFKMAMNQTH PKTLLTDRSA VISEVVTATW PDTAHRYCVW 540 QIYQCALQQL SQAFHGSRTL ECDFKRCLFD CEDEDEFLTA WKEMLEKYDL EDNQWLADLF 600 SVKERWALPY GRETIYADMK SAQQKESLTA ELKNHMSLDY DLLHFFEQFE RLLCHRRSAE 660 LEADVNVNQS TKKAPPMRIL RQAANVYTPA AFKMFEREFE LYMDCLLYRC SEVGTISEYR 720 ICVEDNPKGH FVKFDSLNSM VSCSCKTFEF MGIPCRHMLK VLDTRNIKDL PAQYILKRWR 780 KDAKSGSSNG GYAFSFDGDT ESAQAKRYTT LCRIYGMAAA RAATTLDSFS YMESQSRILM 840 DQVEQVIQAS PPDISVFIGA NCDQTENSVD NIATGGMDSH ANFINGSADG SLTFPFTLGA 900 GALDFR

Sequence ? help Back to Top

Protein Sequence Length: 906 aa Download sequence Send to blast

MPSGSGSEKN DPQIIPGSAA APSLVQTFQP ARATGSAAAD PRLSQQSWPG HAVLLRPCAP  60
WPPRDSSVPQ LQDTANPQQN GDAGAEVAAA DVNPAIDSCD ENMVPKINMI FEGENDAYEF  120
YNAYAEKVGF FVRRSTLWTT SKNIITRRTF VCSREGFREK KKGAKEAKCP RPETRIGCPA  180
SMTIRLTTNG KYRLTEFIPN HNHQLATAST IHMLKEKKIR RKARAVRENL VDDTVRTPEF  240
ENEDEAYEFY SMYAGKIGFG VRKASMTVNA DNVITRRMFV CSKEGFREKK RGARRVQKPR  300
PETRTGCPAC MVIRLTANGK YHVTEFVTFH NHQLGAAAAS NLVIVSQSAE NDQLDGVHLV  360
DRSPGDPIHK QNLINENVIG YTPEGRSCKR YKLTKTPHHG DVGAILEYLQ KMQHDNPSFY  420
YAIKSDEDGN FTNFFWADSK SIIDFDHFGD VVCLDSGYAL QDYGRPLALF TGLNHHKQTV  480
IFGAAMLYDE SNEAFKWLLD TFKMAMNQTH PKTLLTDRSA VISEVVTATW PDTAHRYCVW  540
QIYQCALQQL SQAFHGSRTL ECDFKRCLFD CEDEDEFLTA WKEMLEKYDL EDNQWLADLF  600
SVKERWALPY GRETIYADMK SAQQKESLTA ELKNHMSLDY DLLHFFEQFE RLLCHRRSAE  660
LEADVNVNQS TKKAPPMRIL RQAANVYTPA AFKMFEREFE LYMDCLLYRC SEVGTISEYR  720
ICVEDNPKGH FVKFDSLNSM VSCSCKTFEF MGIPCRHMLK VLDTRNIKDL PAQYILKRWR  780
KDAKSGSSNG GYAFSFDGDT ESAQAKRYTT LCRIYGMAAA RAATTLDSFS YMESQSRILM  840
DQVEQVIQAS PPDISVFIGA NCDQTENSVD NIATGGMDSH ANFINGSADG SLTFPFTLGA  900
GALDFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800025.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025800026.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025800027.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0A9SDT0	0.0	A0A0A9SDT0_ARUDO; Uncharacterized protein
STRING	Pavir.Bb03075.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-108	FAR1-related sequence 5