PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00001.1.g08470.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 167aa MW: 19079.5 Da PI: 6.0217

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00001.1.g08470.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.7	5.8e-50	21	151	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhP+dee++++yL +kv +++++ i e++i+++ePw+Lp+++k +ekew+f+s +d+ky++g+r nratk+g Zjn_sc00001.1.g08470.1.sm.mk 21 LPPGFRFHPHDEEIITFYLIPKVLNSNFTS-VSIGEANINNSEPWELPTTAKMGEKEWFFYSLKDHKYQNGERINRATKAG 100 79***********************888.56***********989999*********************** PP NAM 82 yWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129 +Wkatgkdke++++ + vg+kktL+fy+grapkgekt W+mheyrle Zjn_sc00001.1.g08470.1.sm.mk 101 FWKATGKDKEIYQAsvmFPTIVGMKKTLIFYTGRAPKGEKTGWIMHEYRLE 151 *********64443445**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-52	18	151	IPR003441	NAC domain
PROSITE profile	PS51005	49.268	21	167	IPR003441	NAC domain
Pfam	PF02365	3.5E-25	22	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MTDHQEQEGI RGGVDDGCLN LPPGFRFHPH DEEIITFYLI PKVLNSNFTS VSIGEANINN 60 SEPWELPTTA KMGEKEWFFY SLKDHKYQNG ERINRATKAG FWKATGKDKE IYQASVMFPT 120 IVGMKKTLIF YTGRAPKGEK TGWIMHEYRL EGIQEDLKEQ EGACATN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-43	19	150	15	142	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-43	19	150	15	142	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-43	19	150	15	142	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-43	19	150	15	142	NO APICAL MERISTEM PROTEIN
4dul_A	6e-43	19	150	15	142	NAC domain-containing protein 19
4dul_B	6e-43	19	150	15	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269\|PubMed:16359384, ECO:0000269\|PubMed:21303842}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269\|PubMed:21303842}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024983086.1	4e-66	NAC domain-containing protein 92-like
Swissprot	Q9LJW3	4e-62	NAC59_ARATH; NAC domain-containing protein 59
TrEMBL	A0A1E5V4C4	3e-65	A0A1E5V4C4_9POAL; NAC domain-containing protein 79
STRING	Pavir.Eb00839.1.p	5e-67	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G29035.1	2e-64	NAC domain containing protein 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Manacorda CA, et al. Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes. Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98 [PMID:23945002] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]