PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g04450.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 383aa    MW: 41821.1 Da    PI: 8.4412
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g04450.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81.1e-09317340226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   ktelC+ + + G C+y  rC+FaHg
  Zjn_sc00002.1.g04450.1.am.mk 317 KTELCNKWEQ-GVCPYARRCRFAHG 340
                                   9*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-5315341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-8315346IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-14315347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638315342IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-6317340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-9348379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-7349378IPR000571Zinc finger, CCCH-type
SMARTSM003560.29352379IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.765352380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVCPWALLYK AGANQISTTS LPSISQLDGD SRVTAASSSS SSSCRVKTME RKLEAVSPPR  60
PPRVSSRSDG RGFASPTRAS PPETPMDSPL SCVSHDRGRG SGSVISLPTA APSLETQLKS  120
PSSCVSDSRS GVSVTGSGFS SPTWASPHPN SPSPCVSDSR GGRCSSSFRV SKEREREVME  180
AESLLCEITE RYNDCFLRLR DATAELVDLR HEHVHLRAEN LQLSLLLAEL ETEQSKHASV  240
VALNPPPKPV QAEAAFGRAP RSISIRSKGF LPQQQPRDDS KPQRLRVRAS LAAEEAPEKE  300
IEDEQVEVEA YGQGALKTEL CNKWEQGVCP YARRCRFAHG VQELRPVIRH PRYKTLPCQM  360
FIAPTGCPYG HRCHFRHSPA PTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A9e-163163801075Tristetraproline
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186681e-61AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372671e-61AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149591e-61AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-61CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679282.11e-125putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN82e-98C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLK4AKT51e-124K4AKT5_SETIT; Uncharacterized protein
STRINGSi039512m1e-124(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.18e-32C3H family protein