PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g07220.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 239aa    MW: 24731.2 Da    PI: 5.6811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g07220.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-183786255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Zjn_sc00002.1.g07220.1.am.mk 37 QYKGVRMRS-WGSWVSEIRAP---NQKRRIWLGSYATPEAAARAYDAALLCLKG 86
                                  69****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-293696IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-203795IPR016177DNA-binding domain
CDDcd000189.76E-183793No hitNo description
PfamPF008471.1E-113786IPR001471AP2/ERF domain
SMARTSM003806.6E-3637100IPR001471AP2/ERF domain
PROSITE profilePS5103222.1813794IPR001471AP2/ERF domain
PRINTSPR003675.4E-83849IPR001471AP2/ERF domain
PRINTSPR003675.4E-86076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVKNPSSAIA AATAFTDEKA RAPESAGGGK HQVAARQYKG VRMRSWGSWV SEIRAPNQKR  60
RIWLGSYATP EAAARAYDAA LLCLKGSDAV LNFPSSSPSS SRSSSSSLNV GDRGRSQSDQ  120
LVAGCMSPRS IQRAAAAAAA MFEAGVEDRC SSSAGATTAT SATVSATDHG HEHAAPCSSS  180
AAASTGSSAQ GEELWTDLLD ALASPNSMDL MAAGGAAPFS STWEEPEDDG EMMRLWSFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1237941472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276601e-75KJ727660.1 Zea mays clone pUT5587 AP2-EREBP transcription factor (EREB173) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795709.14e-82ethylene-responsive transcription factor ERF014-like
TrEMBLA0A2S3IS651e-80A0A2S3IS65_9POAL; Uncharacterized protein
TrEMBLA0A3L6TSU01e-80A0A3L6TSU0_PANMI; Uncharacterized protein
STRINGSb01g040280.14e-81(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108303040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.14e-21ERF family protein