PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g07650.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 401aa MW: 43878.4 Da PI: 8.3347

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g07650.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.9	8.6e-29	39	130	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwe 77 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re ++kk ++k++r+r+ tr+gCka+++vkk+++gkw+ Zjn_sc00002.1.g07650.1.sm.mkhc 39 FYVNYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRSKKvidESKTKRPRMITRVGCKAMIVVKKMNSGKWM 117 9******************************************999999999********************* PP FAR1 78 vtkleleHnHela 90 v+k+e+eHnH+l+ Zjn_sc00002.1.g07650.1.sm.mkhc 118 VSKFEKEHNHALS 130 ********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-26	39	130	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MPAHLDGDPI VKPHSMEADL AKEPFEGMEF ESEEAAKLFY VNYARLNGFR ARISRYCRSR 60 RDNSIISRQI VCSKEGFREV RSKKVIDESK TKRPRMITRV GCKAMIVVKK MNSGKWMVSK 120 FEKEHNHALS CSKMVPSAPD ITAGEVDHVT AGIPDPCQEA IKFAKEGSVT EEVYHVAVSA 180 LKEAADKVAA IKRNHPALPG RGCITERNQE VLQMKPVIAF QSVNDVGLKK PAPGPKIFQE 240 PSSNVVLMPT SFLTDPRQQH GLLINGKYTM KTSSDQAIHE KNKGILGSSE EAMVAIPAIP 300 LALCMPVTQS LHGASAALAC GARLVPLEEA ASLVKAIESK IRSGEAIISK LPSSNLTSHA 360 PVTMSSSSED DESDHSEPLM VDAGHRCKDH NSDKLQIWTF S

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MPAHLDGDPI VKPHSMEADL AKEPFEGMEF ESEEAAKLFY VNYARLNGFR ARISRYCRSR  60
RDNSIISRQI VCSKEGFREV RSKKVIDESK TKRPRMITRV GCKAMIVVKK MNSGKWMVSK  120
FEKEHNHALS CSKMVPSAPD ITAGEVDHVT AGIPDPCQEA IKFAKEGSVT EEVYHVAVSA  180
LKEAADKVAA IKRNHPALPG RGCITERNQE VLQMKPVIAF QSVNDVGLKK PAPGPKIFQE  240
PSSNVVLMPT SFLTDPRQQH GLLINGKYTM KTSSDQAIHE KNKGILGSSE EAMVAIPAIP  300
LALCMPVTQS LHGASAALAC GARLVPLEEA ASLVKAIESK IRSGEAIISK LPSSNLTSHA  360
PVTMSSSSED DESDHSEPLM VDAGHRCKDH NSDKLQIWTF S

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954630	1e-136	EU954630.1 Zea mays clone 1474335 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698434.1	1e-159	uncharacterized protein LOC101766516
TrEMBL	K4A6I7	1e-158	K4A6I7_SETIT; Uncharacterized protein
STRING	Si034492m	1e-159	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-24	FAR1-related sequence 5