PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g07690.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 753aa MW: 84897.6 Da PI: 6.2994

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g07690.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.9	1.9e-19	220	325	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCka 64 Y++YA+++GF+ ++++ ++ +g +++tf+C+ gk++ + +ek++r+ a ++tgCka Zjn_sc00002.1.g07690.1.am.mk 220 LYKAYAYRTGFHAVRRTCHNY--EGLRYRSTFTCTYGGKPRAGAAScdspatryplrskrevvaQEKKSRRGAAEKTGCKA 298 6*********999998887..7888**********9999999***********999999999***** PP FAR1 65 klkvkkek.dgkwevtkleleHnHela 90 +l ++ ++ d+kw+v++++leHnH+++ Zjn_sc00002.1.g07690.1.am.mk 299 MLIIRDKRvDDKWKVESVDLEHNHPCT 325 **999*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-17	220	325	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-23	452	546	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence Send to blast
MELFRTNNPN GPACRPPGHA DLPHPPCAAA PSSSQAQILS SPSNKLPSSS LHPHTSAPFL 60 HPQKNSLLFP GDVPTPVALA QIGTPFTATR SVRCPAPFPA PPYRFPRRTL AIPRREAGAE 120 SMGEGSEERV AAALNPSLDD EDEEARRVKE EVADDLNGDP AEEEEDDEEV IVEEDEDEDE 180 AAIDSDDGQG VDNFVPRTLE EALVPRVGMV FDSVDEAFAL YKAYAYRTGF HAVRRTCHNY 240 EGLRYRSTFT CTYGGKPRAG AASCDSPATR YPLRSKREVV AQEKKSRRGA AEKTGCKAML 300 IIRDKRVDDK WKVESVDLEH NHPCTPDMVR FLKAYREMPE SAKKKAKITD EMDEAVEKSL 360 SEIAETRKFP TRSKRGASGG AGVGSQKFSR MESYAQRFRE EDLVALKKFI ETMQHGKPDF 420 IHSWDLDQES RVKNFFWTDS RAQTQYHYFG DVITLDVMYL QHSCAGLPLA TILGVNNHGH 480 LVLLGCGLLS SDSKENYVWL LKRWLSCMNG KPPEAITTSY LDVIAEAVAE VFPNSRHRFC 540 FWHILKKLLE NVGRTQEKEA ISSRFKEVVY DSVTLTDFEK EWGAMVDQYK LKDNEWFSAL 600 YNCRKQWAPG YVNHSFWAGT SAIRKIDKPD PYFDGVVTIK TTVPVFLEQY KATLKGKLER 660 EAYDDLRSYY SRLTLLSGLP FEEQLVELYT GDRRLDPNMA SNSSAITHGE VLIHGDRRIE 720 MNMASPHLTQ RERRVDMNMV SPHLIQGDRA PKG

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence Send to blast

MELFRTNNPN GPACRPPGHA DLPHPPCAAA PSSSQAQILS SPSNKLPSSS LHPHTSAPFL  60
HPQKNSLLFP GDVPTPVALA QIGTPFTATR SVRCPAPFPA PPYRFPRRTL AIPRREAGAE  120
SMGEGSEERV AAALNPSLDD EDEEARRVKE EVADDLNGDP AEEEEDDEEV IVEEDEDEDE  180
AAIDSDDGQG VDNFVPRTLE EALVPRVGMV FDSVDEAFAL YKAYAYRTGF HAVRRTCHNY  240
EGLRYRSTFT CTYGGKPRAG AASCDSPATR YPLRSKREVV AQEKKSRRGA AEKTGCKAML  300
IIRDKRVDDK WKVESVDLEH NHPCTPDMVR FLKAYREMPE SAKKKAKITD EMDEAVEKSL  360
SEIAETRKFP TRSKRGASGG AGVGSQKFSR MESYAQRFRE EDLVALKKFI ETMQHGKPDF  420
IHSWDLDQES RVKNFFWTDS RAQTQYHYFG DVITLDVMYL QHSCAGLPLA TILGVNNHGH  480
LVLLGCGLLS SDSKENYVWL LKRWLSCMNG KPPEAITTSY LDVIAEAVAE VFPNSRHRFC  540
FWHILKKLLE NVGRTQEKEA ISSRFKEVVY DSVTLTDFEK EWGAMVDQYK LKDNEWFSAL  600
YNCRKQWAPG YVNHSFWAGT SAIRKIDKPD PYFDGVVTIK TTVPVFLEQY KATLKGKLER  660
EAYDDLRSYY SRLTLLSGLP FEEQLVELYT GDRRLDPNMA SNSSAITHGE VLIHGDRRIE  720
MNMASPHLTQ RERRVDMNMV SPHLIQGDRA PKG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797820.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A2T8I5H8	0.0	A0A2T8I5H8_9POAL; Uncharacterized protein
TrEMBL	A0A2T8I5H9	0.0	A0A2T8I5H9_9POAL; Uncharacterized protein
STRING	Pavir.Ia03886.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-62	FAR1-related sequence 5