PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g11520.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 562aa    MW: 58686.5 Da    PI: 8.7677
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g11520.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-0579101123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     ++C++C+k F r  nL+ H r H
  Zjn_sc00002.1.g11520.1.sm.mkhc  79 FVCEICNKGFQRDQNLQLHRRGH 101
                                     89*******************88 PP
2zf-C2H213.80.00018155177123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     +kC +C+k +  +s+ k H +t+
  Zjn_sc00002.1.g11520.1.sm.mkhc 155 WKCDKCSKKYAVQSDWKAHVKTC 177
                                     58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.29E-778101No hitNo description
Gene3DG3DSA:3.30.160.601.9E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94979101IPR007087Zinc finger, C2H2
SMARTSM003550.01779101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355220120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.29E-7150175No hitNo description
SMARTSM0035590155175IPR015880Zinc finger, C2H2-like
PRINTSPR012177.7E-9230242No hitNo description
PRINTSPR012177.7E-9247263No hitNo description
PRINTSPR012177.7E-9277289No hitNo description
PRINTSPR012177.7E-9383400No hitNo description
PRINTSPR012177.7E-9426451No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MEVQPTPTTT PVASSGGAQP QQLPPPGPPA KKKRALPGMP GAWLFVVNDD DGGGGNRGAD  60
PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SGKEARKRVY  120
VCPEPSCVHH DPTRALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHVKTCGSR  180
EYRCDCGTLF SRRDSFITHR AFCDALAEES AKAHAGAPAE EDGRSAAVGP PPAPPPSQVP  240
PPAAPAPVRH QPPPPVPAAP PAPHHAEQRN ERETNAPEPV QFTPPPQAPA MPVPSQAPAT  300
EANVCVGTSS SRSSVAAASQ SLIGGMFAPS SMAPAAPQFT NLGDGVRGPD RALPVKPPPL  360
CLARDAPSSI FSAPVATDRQ HFAPQPPPPP PSPSPHMSAT ALLQKAAQMG ATSSSSSFLR  420
GLGLDVSTSS PGPSSSGPQH HPETPLQQWP PRVETDASAP MLSAGLVLGL PYDSTGAPVC  480
LPELMMGQST LFSAKPATLD FLGLGMSPTD APASRGLSPF IQPIGGAMGI GGSSAGAAET  540
FGAGHGAQAK PWERNPSSSP IL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-36151212364Zinc finger protein JACKDAW
5b3h_F8e-36151212364Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0545020.0BT054502.1 Zea mays full-length cDNA clone ZM_BFc0103M17 mRNA, complete cds.
GenBankBT0546180.0BT054618.1 Zea mays full-length cDNA clone ZM_BFb0032E02 mRNA, complete cds.
GenBankEU9555780.0EU955578.1 Zea mays clone 1537717 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985335.10.0protein indeterminate-domain 1
TrEMBLK4A8770.0K4A877_SETIT; Uncharacterized protein
STRINGSi035083m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-91indeterminate(ID)-domain 2